Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00155 ATGAAGAAATTGATAGCTCTAGGATTTGAGGGTTCCGCCAATAAGATTGGCGTTGGAGTCGTAACTTTAGATGGCGACATTTTGTCTAACCCACGCCACACTTACATCACACCTCCTGGCCATGGATTTCTCCCTCGTGAAACTGCACAACACCATTTCCAGCATGTTCTTCCCTTGATCAAATCTGCTCTAGAAACTGCGGGTATTACTCCCGAAGAAATTGACTGCCTTTGCTATACCAAGGGACCCGGAATGGGGGCACCTCTGCAAGTTGCTGCCATTGTTGTGAGGATTCTATCTCAGTTGTGGAAGAAGCCTATTGTTGCTGTTAATCACTGTGTTGCCCATATTGAGATGGGCAGGATTGTGACCGGTGCAGATGATCCTGTTGTTCTGTATGTAAGTGGCGGTAATACACAGGTAATCGCATATAGTGAAGGAAGGTATCGGATCTTTGGCGAGACGATTGATATTGCTGTTGGAAATTGTTTGGATCGATTTGCTCGGGTATTGACTCTCTCTAACGACCCGAGCCCCGGATATAATATCGAGCAGCTTGCAAAAAAAGGCAAACAATTTATAGAAATTCCTTACGTCGTGAAAGGAATGGACGTATCGTTTAGTGGAATATTAAGCTTTGTTGAAGCAACTGCTGTGGAAAAGCTCAAGAATAATGAGTGCACCCCAGCTGATTTGTGTTATTCCCTGCAGGAAACATTATTTGCCATGCTCGTGGAGATCACGGAAAGAGCAATGGCCCATTGTGAAAAGAAAGACGTTCTTATAGTTGGTGGGGTCGGCTGCAATGAACGGCTGCAAGAAATGATGAGAATCATGTGTAGCGAACGTGGTGGAAGGTTGTTCGCTACCGATGACAGGTATTGTGTCGATAATGGAGCAATGATTGCTTATACTGGTCTTCTCGCTTTTGCCCATGGCATAACAACTCCGATAGAGGAAGCGACTTTCACCCAGAGGTTCCGAACCGATGAGGTGCATGCGATATGGAGAGAACAAAAGGAATTGGCCGAAAAGGATGGGCTTTCATCTATGGCTTCTTGA 1062 45.39 MKKLIALGFEGSANKIGVGVVTLDGDILSNPRHTYITPPGHGFLPRETAQHHFQHVLPLIKSALETAGITPEEIDCLCYTKGPGMGAPLQVAAIVVRILSQLWKKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGKQFIEIPYVVKGMDVSFSGILSFVEATAVEKLKNNECTPADLCYSLQETLFAMLVEITERAMAHCEKKDVLIVGGVGCNERLQEMMRIMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGITTPIEEATFTQRFRTDEVHAIWREQKELAEKDGLSSMAS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1445376 1447352 - Bda024563.1 Bda08g00155 11011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00155 353 CDD NBD_sugar-kinase_HSP70_actin 7 175 - -
Bda08g00155 353 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 30 304 IPR000905 -
Bda08g00155 353 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 7 303 IPR017861 -
Bda08g00155 353 Gene3D - 128 290 - -
Bda08g00155 353 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED 1 339 IPR034680 GO:0000408|GO:0002949
Bda08g00155 353 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 1 339 IPR000905 -
Bda08g00155 353 SUPERFAMILY Actin-like ATPase domain 6 303 IPR043129 -
Bda08g00155 353 Gene3D - 7 309 - -
Bda08g00155 353 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 130 142 IPR017861 -
Bda08g00155 353 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 7 20 IPR017861 -
Bda08g00155 353 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 98 117 IPR017861 -
Bda08g00155 353 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 77 97 IPR017861 -
Bda08g00155 353 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 152 173 IPR017861 -
Bda08g00155 353 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 260 269 IPR017861 -
Bda08g00155 353 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [kae1]. 4 337 IPR034680 GO:0000408|GO:0002949
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00155 K01409 OSGEP, KAE1, QRI7; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] - egr:104434007 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00155 Bda-Chr8:1445376 Bda13g00430 Bda-Chr13:5256452 5.11E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1229 Blo01g00198 . . Bda08g00155 . . . Bma05g01168 . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0844 Cone11ag0664 . . . . . . . . Bpe05g00977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007916 1 3 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 2 0 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00155 Bda_Chr08 FPKM 82.851608 87.252586 68.282478 73.407417 127.98436 109.789268 124.424278 78.824333 81.132645