Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00156 ATGGCAGATTCTGGTGAAAATCATCCGGCAGAACAAGTTTGCAACTTTTTCAGAAAGCCATCAAAAAATAAAAACATCAGGAAAAGGATTATTGAAGATGATGAAATTGGTGATTCGAATTCAGAGAGTTCCATACTGCAAAATCAGAGGAAGAACAATAAGACTGAGAGCAAGCTTTACTTTACTTCCGGACCCTCTAAGAGTTCTCTGTCAACGGACCCAAATGCAGAACAAGAAAAACCCATATTTCAGTTCGAGTCTTCAAAAGAAATCCAAGTGGAACATGATAGCAGAGCAACGGCCACGCTAGAAACTGAGACTGACTTCTCGAAAGATGCTCGAGCTATCCGGGAAAGAGTTCTTAAACAGGCAGAGGAGGCTTTGAAGGGTAAAGGCAAGAGTTCTGGGGATGAGAAGCTTTACAGAGGCATCCATGGCTACACAGACTACAAAGCCGGATTCCGAAGGGAGCAAACAGTTGCCAGTGAGAAAGCGGGTGGGTCACATGGACCGCTTAGAGCTTCTGCTCACATAAGAGCTTCAGCCAGATTTGATTATCAACCTGACATTTGCAAGGATTACAAAGAGACTGGTTACTGTGGATATGGAGATTCGTGTAAGTTTATGCATGATCGTGGGGATTACAAATCCGGGTGGCAAATGGAGAAGGAATGGGATGAAGCAGAGAAAGCAAGGAAGAGAAGCCTCGCTAAGGGATTGGATGATGGAGGCGACGAAGCCACTGGCCAAAGCGATGAAGAAGAAGAAGATGCTCTGCCCTTTGCTTGTTTCATTTGTCGGCAGCCATTTGTAGACCCTGTTGTAACGAAGTGCAAACACTATTTCTGCGAGCATTGTGCATTAAAGCATCACACGAAAAACAAGAAGTGCTTTGTTTGCAACCAGCCCACGCTTGGGATATTCAATACAGCCCAAGAAATAAGGAAAAGGATGGCTGCCGAAGGTAAATAG 972 44.44 MADSGENHPAEQVCNFFRKPSKNKNIRKRIIEDDEIGDSNSESSILQNQRKNNKTESKLYFTSGPSKSSLSTDPNAEQEKPIFQFESSKEIQVEHDSRATATLETETDFSKDARAIRERVLKQAEEALKGKGKSSGDEKLYRGIHGYTDYKAGFRREQTVASEKAGGSHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWDEAEKARKRSLAKGLDDGGDEATGQSDEEEEDALPFACFICRQPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTLGIFNTAQEIRKRMAAEGK 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1453996 1455631 + Bda024564.1 Bda08g00156 11012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00156 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872
Bda08g00156 323 Gene3D - 183 217 - -
Bda08g00156 323 CDD RING-HC_RNF113A_B 261 301 - -
Bda08g00156 323 SUPERFAMILY RING/U-box 262 307 - -
Bda08g00156 323 ProSitePatterns Zinc finger RING-type signature. 278 287 IPR017907 -
Bda08g00156 323 MobiDBLite consensus disorder prediction 40 79 - -
Bda08g00156 323 MobiDBLite consensus disorder prediction 34 79 - -
Bda08g00156 323 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Bda08g00156 323 Pfam Zinc finger, C3HC4 type (RING finger) 262 304 - -
Bda08g00156 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 320 IPR013083 -
Bda08g00156 323 SMART ring_2 263 300 IPR001841 -
Bda08g00156 323 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872
Bda08g00156 323 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Bda08g00156 323 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 1 322 - -
Bda08g00156 323 PANTHER ZINC FINGER PROTEIN 183 1 322 IPR039971 -
Bda08g00156 323 ProSiteProfiles Zinc finger RING-type profile. 263 301 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00976 Bda-Chr3:8815365 Bda08g00156 Bda-Chr8:1453996 5.14E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16237 PF13920 zf-C3HC4_3 1.20E-08 CL0229 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00156 K13127 - csv:101221334 553.903