Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00158 ATGCAGGAAGAGGCACCAATCAGTGTCCCTGTCACTTCTGACAAATTTTGGTTTCTGACAAAAAATCATTCATTTTCACTTCCATGCCCTTTCGCAAACAAAGGAAACTATGTTATAAGCTTAAGTCAGTTAGTGCGATGGTTGGGAGTGAAAGCTGAAGAACTGGGAATTGACATATATCCAGGGTTTGCTGCAAGTGAGATGTTATATGATGGCGACAACAAAGTAATTGGCATTAGAACAAATGATTTGGGCGTAGCTAAAGATGGCTCAAAGAAAAACAATTTTCAGCATGGTGTACAACTGAAAGGACGTTTGACACTTTTGGCAGAGGGTTGCCGGGGATCATTATCCGAGAAAATTATTAAAAAATACAGCTTGAGAGAAAAGGGAAATGGCCAGCATCAAACTTTTGCTCTGGGAATTAAAGAGGTTTGGGAGATAGACGAAGCCAAGCATGAGCCTGGTGCGGTGCTTCACACTTTGGGCTGGCCCCTGAATCGAAAGACGTACGGGGGATCATTTCTGTACCACATGAAAGATAGACAGATTGCGATTGGCCTTGTGGTTGCTCTGAATTATGAGAATCCTTATCTGAGCCCATATGAAGAGTTTCAGAAACTTAAACATCATCCCGCCTTCCAGCCACTTCTTGAAGGTGGGAGTTGTCTTCAGTATGGGGCTCGCACCTTAAATGAAGGTGGTTTTCAGTCTATTCCATATCCAGTTTTCCCTGGAGGAGCGATCATTGGATGTTCAGCAGGCTTCTTGAATGTGCCAAAGATAAAGGGTACTCATACTGCAATGAAGTCTGGTATGCTTGCAGCTGAAGCTGCATTTGGTGTGCTTCATGACCAATCAAAAATGGAATTGTATTGGGATGCTTTGCAGGATTCATGGATATGGGAAGAACTCTACCGAGCTAGGAATTACCGTCCAGCATTTGATCATGGGCTTATTCCTGGATTGGCCATTAGTGGTTTAGAACACTATATATTGAAAGGAAGATCTCCTGTTACTCTTAACCATGGAAAGCCTGATCATCAAGCAACAAAGTTTGCCCAATCGCAATCTCCCATTCAATATCCAAAGCCAGATGGAATCGTTTCTTTTGATGTTCCAACCTCTCTTCACAGGAGCAACACAAATCACGAACATGACCAACCTGCTCATCTCCGCTTAAGGAACCCCATAATTCCTGAGCAAGTAAATTTTCCAGACTATGCTGGACCAGAGTCACGATATTGTCCCGCACGTGTATACGAGTATATCACAGATGAAAAGGGTGAAATGAAGTTGCAGATAAATGCTCAAAATTGCCTTCACTGCAAGGCGTGTGATATAAAGGACCCAACTCAAAACATCGAGTGGACGGCACCGGAGGGAGGTGGAGGTCCAGGCTACTCCGTCATGTAA 1416 43.57 MQEEAPISVPVTSDKFWFLTKNHSFSLPCPFANKGNYVISLSQLVRWLGVKAEELGIDIYPGFAASEMLYDGDNKVIGIRTNDLGVAKDGSKKNNFQHGVQLKGRLTLLAEGCRGSLSEKIIKKYSLREKGNGQHQTFALGIKEVWEIDEAKHEPGAVLHTLGWPLNRKTYGGSFLYHMKDRQIAIGLVVALNYENPYLSPYEEFQKLKHHPAFQPLLEGGSCLQYGARTLNEGGFQSIPYPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLAAEAAFGVLHDQSKMELYWDALQDSWIWEELYRARNYRPAFDHGLIPGLAISGLEHYILKGRSPVTLNHGKPDHQATKFAQSQSPIQYPKPDGIVSFDVPTSLHRSNTNHEHDQPAHLRLRNPIIPEQVNFPDYAGPESRYCPARVYEYITDEKGEMKLQINAQNCLHCKACDIKDPTQNIEWTAPEGGGGPGYSVM 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1463114 1469978 + Bda024565.3 Bda08g00158 11014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00158 471 SUPERFAMILY FAD/NAD(P)-binding domain 9 368 IPR036188 -
Bda08g00158 471 Gene3D - 2 308 IPR036188 -
Bda08g00158 471 Gene3D - 372 466 - -
Bda08g00158 471 Pfam Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 367 469 - -
Bda08g00158 471 SUPERFAMILY FAD-linked reductases, C-terminal domain 138 233 - -
Bda08g00158 471 SUPERFAMILY 4Fe-4S ferredoxins 371 470 - -
Bda08g00158 471 Gene3D - 9 371 - -
Bda08g00158 471 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 431 460 IPR017896 -
Bda08g00158 471 PANTHER ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE 2 471 IPR040156 GO:0004174|GO:0022900
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00158 K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] - tcc:18602455 837.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00158 Bda13g00549 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01062 Bda-Chr4:61639231 Bda08g00158 Bda-Chr8:1463114 5.96E-147 dispersed
Bda08g00158 Bda-Chr8:1463114 Bda13g00838 Bda-Chr13:9898974 2.31E-156 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1268 Blo01g00193 . . Bda08g00158 . . . Bma05g01166 . . . Cma14g01519 . Car14g01343 Sed12g0692 . Cpe03g01278 Bhi01g01188 Tan10g1201 Cmetu06g1782 . Hepe05g1300 . Lcy11g1259 . . . . . . . . . Cone18ag0851 . . . . . . . . Bda13g00549 Bpe05g00974 . . . . . Cmo14g01554 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012450 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00158 Bda_Chr08 FPKM 6.072973 6.448313 3.394739 3.423329 9.087825 7.573935 9.232066 3.768735 4.272716