Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00159 ATGCCCTCTGGTTCAAATTTTTCAGTCAAGACCTTGATCTTTCCGACCCTCTTGATCCCTTTCGGAAACCCCTCTCCTTCATTCAAGGCAGCTTATCAAGTATGGAGAGAAGCCTTTGGTATGTATCCATGGCCCCTCGTGTTGCGAGTCAAGAGATGTTGGAGCAGACTGAAAAAGTGGCTGAGATCGAATTTTTCCGAGTCTGAGGCTACACTGGGAAAAGGCGCATCGGAGGCTGACATTCGAGAGTTGGAGGATTCCTTGAAAGTGAAATTGCCTCTTCCGACGCGTCTTCTCTACCGTTTTCATAACGGTCAAATGCTTGAAGAGGATGAATTAATGTCAAGTTTTGGAAGTCCATTGGGTCTCATTGGTGGCTATTCTTTCTATGACCAATTAGTCAATGTCTATTTGTTACCCTTGAATCAGATGATTTCAGAAACAAATGGGATCAGGAGGCATCTTGGTTTTTCAGCAAGGTCTAAGTATGTTCTTGTGGCTGCCTCTTCTACGCACGTCAGAAAATTCTTCTTTCTCAACTGCATGACTGGTCAACTCCATGTCGGTACTAGGAATCTTGAAATTGATGGAGAAATGATGCCTTGTGTGCCGAATGCGCTGATAACTTCAGTTCATGACCGTAACTCATGTAACCAACAAGATGCTATGCTACTATGGTTGGAAGAGCACGCCAATCGCCTAGAGAATGGCTTAATTAAAGTTCGTGATGACGAGGGCGTCAAAAGCATCAGTTTGTTTCCAGAAGAACCGCCCCTCTGTTCTACAGCCACAACCCACGGTGTAAAGGTTCGTGCTTCAGCGCTATTCGTACCAGAGTTAACTAACCTTCAAGATGATGCAGAGAAGTACTTTTTTACTTACTCGATCCGCATGTCTCTTCAACCCGAAGGATGTATTATAAATGGGACTTTGTTTGAGTCTTGTCAATTGTATTGGAGGCGGTGGGTAATCCGAGCAAATGATGTGGTGAAATCCGATTTTAATGGAGAAGCCGTGATTGGAAAGTACCCACTCTTGCACCCGGATGAAAAAGAGTTTGTTTATGAAAGTTGTTCGCCACTCGAGTCGTCTTTCGGGTTCCATGGAAGGTTCATTCACTTTTATCCCTGGCAGTTTGAGGGACTCGAAAGGTGGGCCCATTCGAGGTCGAAGTGGCAAGGTTTCCGCTCCAAGTGCCAGACTACATTTACTGACTCCCCATATGAATATGGGTCGTGTAGTTCATGA 1248 44.95 MPSGSNFSVKTLIFPTLLIPFGNPSPSFKAAYQVWREAFGMYPWPLVLRVKRCWSRLKKWLRSNFSESEATLGKGASEADIRELEDSLKVKLPLPTRLLYRFHNGQMLEEDELMSSFGSPLGLIGGYSFYDQLVNVYLLPLNQMISETNGIRRHLGFSARSKYVLVAASSTHVRKFFFLNCMTGQLHVGTRNLEIDGEMMPCVPNALITSVHDRNSCNQQDAMLLWLEEHANRLENGLIKVRDDEGVKSISLFPEEPPLCSTATTHGVKVRASALFVPELTNLQDDAEKYFFTYSIRMSLQPEGCIINGTLFESCQLYWRRWVIRANDVVKSDFNGEAVIGKYPLLHPDEKEFVYESCSPLESSFGFHGRFIHFYPWQFEGLERWAHSRSKWQGFRSKCQTTFTDSPYEYGSCSS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1470956 1473054 - Bda024566.1 Bda08g00159 11015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00159 415 Gene3D - 52 189 IPR037883 -
Bda08g00159 415 Gene3D ApaG domain 261 403 IPR036767 -
Bda08g00159 415 Pfam ApaG domain 283 367 IPR007474 -
Bda08g00159 415 PANTHER F-BOX PROTEIN SKIP16 9 370 - -
Bda08g00159 415 PANTHER F-BOX PROTEIN SKIP16 9 370 - -
Bda08g00159 415 ProSiteProfiles ApaG domain profile. 262 411 IPR007474 -
Bda08g00159 415 SUPERFAMILY SMI1/KNR4-like 53 156 IPR037883 -
Bda08g00159 415 SUPERFAMILY ApaG-like 264 371 IPR036767 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00159 K10290 FBXO3; F-box protein 3 - mnt:21399193 489.574
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1271 Blo01g00192 . . Bda08g00159 . . . . . . . . . . . . . Bhi01g01191 . . . Hepe05g1298 . Lcy11g1257 . . . . . . . . . . . . . . . . . . . Bpe05g00973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011929 1 2 1 1 1 0 1 0 0 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 2 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00159 Bda_Chr08 FPKM 12.290175 13.439164 10.093948 10.393376 14.748601 15.292233 14.517724 11.986005 10.027707