Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00160 ATGGCTCCTCCGGTAAAATCTTTCAGGCAAGGCTACAAGGATTCCGAAGAATCTGATACGCCGTCGAACAGTCTTTGGGTCGGAAATTTGGCTACGGATGTTACCGATTCGGATTTGATGGCTCTCTTTGCTCGGTTCGGTGCCCTTGACAGCGTCATATCATATTCGGCTAGGAGCTACGCGTTCGTCTTCTTCAAGCGCGTGGAGGATGCACAAGCGGCGAAGAACGCTCTGCAAGGGGCTCTTGTTCGTGGCATTTCGATCAAAATCGAGTTTGCGAGACCGGATCAGCGGCCTGACTTCAGGGATGGACAGTTTCAGGGTCGAAACATGGGGCTGGCTGATATTCAGTCGGGTAATAAAAGACAACCTTCTCATTTTGTCGAGGGACCTAGAGGAGAGAGTCAACCCAGTAAAGTTTTGTGGGTTGGATATCCAGCTTCTGTTCAAATTGATGAACAAATGCTCCATAATGCCATGATTTTATTTGGCGAGATTGAGAAGATTAAGAGTTTTCCATCTAGACATTATTCATTTGTGGAATTTAGAAGTGTTGATGAAGCAAGGCGAGCTAAAGAGGGCTTGCAGGGTAGACTTTTTAACGATCCTCGAATTACAATAATGTTTTCAAATAGTGAGCTGGCGCCTGGAAAAGATTACTCGGCTGTTTATGGTGGTCCAAAGGGCTCTAGGCCTGAGATTTTTCTCAATGAACGTTTAGATGTTCTGAGTCATAATCATCCATTGGTGTCAAATAATTTTACGGGATTGGTTCCATCTGGTACCCCTCTAGGACCAAATATGCTGATGAGACCATTTGGTCATGGTAATTTGGAACCGCTTCTTCCTGGCCCTGATTTTAATGAGTTTCCAGCACCTCATAGTCTTCAGGATGCAAATACCAAGAGTTTAATGGGTCCAAATTTGAGCAGGTTGTCTCCCTCAGCAGGCATTCTTTCATCTCCTGCACCTGGTATTCAATCCTCTATGAGATCCTCAATAAATACATGGGATGTTGACAAAACCCAATTTGAAAGGGACTCTAAAAGGTTGAGGGTGGATGCTACTTCACTTATGGGTGATACTGCTTTTCCGTCAAGAAAAATAGACCATAGTTTGGGACCAGATCAACAATACAGATTTGGACCAATTGCAGAAGGACGTGCTCCTGTTCCTTTTACGAATGCCACAGGGAGGAATCGCATAAGTCCTGTTGGTGCAAATGTGACTACAAGTGGACCTGTCCAACCACACCCTGATAATGATTTTGTGTGGCGTGGAATGATTGCAAAGGGAGGAACACCAGTTTGTCATGCTCGGTGTGTTCCCATTGGAAAAGGGATCAGCAGTGAGCTTCCCGAAGTTGTTAACTGTTCTGCTCGAACCGGTTTGGATCAGCTCACTAAACACTATGCTGAAGCCGTTGGATTTGATGTTGTTTTTTTCTTGCCAGACAGTGAAGACGATTTCGCATCTTACACGGAATTCCTGCACTATCTGGGTGGAAAAAACCGTGCTGGAGTTGCGAAGTTTGATAATGGTACTACTTTGTTTTTGGTTCCTCCTTCTGATTTTTTAAGAAAAGTTTTGAAAGTTGGAGGCCCAGAGCGATTATATGGTGTTGTTCTCATATTTCCACAAGCTCCTAATAGCGAACCCCCTCCACCTCAATTAAATCTTCCTATTCCACCTCAGTATATTGAGAGAAAACAAGTTCTATCTGTTCCAGGTGAGTATGATCAAATTCCCTTGAAAGATGAGCGACTTCCACTGCCTGATTATACTAGACCTCTTCATGAGAACACCAAAGCCTCTCCTAAACCATTGTTTTCGTCTGTAAATGAGTCACTGCCGGTGCAGTCAATGCCCCAAAGCAGTATTGCATCAGCCAGTATTGCATCAGCGTCTCAAGCTGGAGTTTCATTGACACCTGAGCTTATTGCCACTCTAGCTTCGTTAATACCTGGGAAGAATCAGTCATCTACCATAGATAACTCTAAGCTACCATCAGGATCATCCACCATCAGACCTTCACTTCCTCCTCCTGGGTTACAAGATCAACAAGCAGCTGTCCATACAGGTCATTCGTTTCCTCAAGTGGGTATTCATGCTAATATACAGGGGCAAAGTTATTTGCAATATAAGTCCTACCCCTCCCTCTCAAGTATGCCTAGCAACCCTGCACAGTTGGTCAATGGAAGTGCCTCAATGCAAGATTCAACTGCCAGCCAGGCACAGCAGGTTCCTCTTCCTCCCAGGCCTTCGACTAATTATTCCTCCCCTGAAAGTGGTCAAGCTCCTAATACGCTGCTGGCTAATCCTCAGTATCAGCAAGATGTTTCTCGTACTACTTTGGGAGCTTATGGGGCAGTACATGGAGTTGACCTCTCCGGACAAAGTCCATTGGTGCTGCAACAATTGACCAACTATACGTCCTTACCTAATCAGGGTCAGAGTGCTAATTATTCACAACCCCAAACCACAACTCAATTAACAACCGACAGAGTAAACACTGAGCTTCCTAATCAGGTACAATCTCGTGAAATGGGTACTGGGATGCCAGAGGTTGAGGTTGACAAGAACCAGAGATATCAATCAACTCTCCAATTTGCAGCTAGCTTATTGCAACAGATCCAGCAGCAACAAGCAGCCCGCAATTCTTGA 2664 44.89 MAPPVKSFRQGYKDSEESDTPSNSLWVGNLATDVTDSDLMALFARFGALDSVISYSARSYAFVFFKRVEDAQAAKNALQGALVRGISIKIEFARPDQRPDFRDGQFQGRNMGLADIQSGNKRQPSHFVEGPRGESQPSKVLWVGYPASVQIDEQMLHNAMILFGEIEKIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSELAPGKDYSAVYGGPKGSRPEIFLNERLDVLSHNHPLVSNNFTGLVPSGTPLGPNMLMRPFGHGNLEPLLPGPDFNEFPAPHSLQDANTKSLMGPNLSRLSPSAGILSSPAPGIQSSMRSSINTWDVDKTQFERDSKRLRVDATSLMGDTAFPSRKIDHSLGPDQQYRFGPIAEGRAPVPFTNATGRNRISPVGANVTTSGPVQPHPDNDFVWRGMIAKGGTPVCHARCVPIGKGISSELPEVVNCSARTGLDQLTKHYAEAVGFDVVFFLPDSEDDFASYTEFLHYLGGKNRAGVAKFDNGTTLFLVPPSDFLRKVLKVGGPERLYGVVLIFPQAPNSEPPPPQLNLPIPPQYIERKQVLSVPGEYDQIPLKDERLPLPDYTRPLHENTKASPKPLFSSVNESLPVQSMPQSSIASASIASASQAGVSLTPELIATLASLIPGKNQSSTIDNSKLPSGSSTIRPSLPPPGLQDQQAAVHTGHSFPQVGIHANIQGQSYLQYKSYPSLSSMPSNPAQLVNGSASMQDSTASQAQQVPLPPRPSTNYSSPESGQAPNTLLANPQYQQDVSRTTLGAYGAVHGVDLSGQSPLVLQQLTNYTSLPNQGQSANYSQPQTTTQLTTDRVNTELPNQVQSREMGTGMPEVEVDKNQRYQSTLQFAASLLQQIQQQQAARNS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1476361 1483053 - Bda024567.1 Bda08g00160 11016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00160 887 MobiDBLite consensus disorder prediction 588 612 - -
Bda08g00160 887 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 1 96 - -
Bda08g00160 887 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 113 884 - -
Bda08g00160 887 MobiDBLite consensus disorder prediction 658 681 - -
Bda08g00160 887 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 85 IPR000504 GO:0003723
Bda08g00160 887 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 205 IPR000504 GO:0003723
Bda08g00160 887 Gene3D - 131 223 IPR012677 -
Bda08g00160 887 CDD RRM3_Spen 141 211 - -
Bda08g00160 887 Gene3D - 5 127 IPR012677 -
Bda08g00160 887 MobiDBLite consensus disorder prediction 658 690 - -
Bda08g00160 887 CDD RRM3_Spen 25 94 - -
Bda08g00160 887 MobiDBLite consensus disorder prediction 1 24 - -
Bda08g00160 887 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723
Bda08g00160 887 SUPERFAMILY RNA-binding domain, RBD 129 212 IPR035979 GO:0003676
Bda08g00160 887 SMART rrm1_1 24 91 IPR000504 GO:0003723
Bda08g00160 887 SMART rrm1_1 140 208 IPR000504 GO:0003723
Bda08g00160 887 SUPERFAMILY RNA-binding domain, RBD 13 111 IPR035979 GO:0003676
Bda08g00160 887 MobiDBLite consensus disorder prediction 722 770 - -
Bda08g00160 887 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 96 - -
Bda08g00160 887 PANTHER RNA RECOGNITION MOTIF-CONTAINING 113 884 - -
Bda08g00160 887 Pfam SPOC domain 418 536 IPR012921 -
Bda08g00160 887 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 212 IPR000504 GO:0003723
Bda08g00160 887 Coils Coil 861 881 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00160 - - - zju:107405094 832.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00160 Bda-Chr8:1476361 Bda02g00069 Bda-Chr2:2910460 8.82E-08 dispersed
Bda08g00160 Bda-Chr8:1476361 Bda06g00458 Bda-Chr6:6618326 1.50E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00160 Bda_Chr08 FPKM 1.966497 2.657388 6.157004 4.752847 49.650036 48.763 52.625595 6.365287 7.172534