Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00162 ATGCACAATATACATCGGTTGATATCCCGCCTGTCCTCTACCTCCACCTCCACTGGTGTAAGCACATCAATGTCAAGATTTGTAGAAGAAAATACAAGATTCATTTTGAAAGCCAATCCAGTGATCGCATCAAGAAATGCTGGGAAAGTTTATCAGTTAACCAGTTCAAGAGTTTTCTCAACAGGAAAATTTGGTGAAGGCGAAGGCGTGGATGACTGGGATAAAAGTGTGAAATCATTTTCTGGTGCGCCATCAGATGATTTTGGATGGGATTCAGTATCTTCGTGGTCAACAGGTCTGACTAAGGAGCATTTTGATGGGGAAGCTGTTAGTCAGAAGACTGGTGGAGAAGACACGTCTCAATCTTCGGTCGTGTCTGGTTTGCAAGAAATTGAAGATAAACTTAAAGAATTGGAGGCTGAGCAGACGAAAAGCAAGGCCTTTGTAGATGGTTGGGGACAAAGAATGAAGGAGCTAAGTGTTCTCATGAAGCAAGTAAGGGAACCTGGTGCAAGAGGGTCTTATCTCAAGGATTCAGAGAAGGCAGAGATGTACAGATTGCATAAGGAGAACCCTGAGGTGTATACGGTCGAGAGGCTTGCCAAGGATTACAGGATTATGAGGCAGAGAGTTCATGCCATTCTTTGGTTGAAGGAGACGGAGGAGGAAGAGGAGAAAAAACTAGGTCATCCTTTGGATGATTCTGTTGAGCTCTTGCTTGACTCTTTTCCAGAATTTTTCAACTCCCATGACAGAGAATTCCATGTCGCATCCCTGCCATATAAGCCTGACTTCAAGGTCATGCCGGAAGGTTGGGACGGTACAACTAGAGATTCAGACGAAGTTCACTATGAGATCTCTATGAAGGAAGATGAAATGCTTTATCAAGAATTCCTCCAGAGATTAAATTTCAACAAAAAGAAAGTTGCAGGGGAAGTTTATCGGCACAAATATAGTAGGCGTCGGTCTGCAAATGGTTGGAACTTCACGGTGGAGAAACTCGGACCCCGAGGAAAGCGCGGAGGTGGTGGTGGCTGGAAATTTGTGAGCTTGCCCGATGGTTCCAGCCGACCTTTGAACGAAATGGAGAAGATGTATGTAAAGCGAGAGACACCTCGCCGCAGACGCAAGATCCTACCCTGA 1143 45.06 MHNIHRLISRLSSTSTSTGVSTSMSRFVEENTRFILKANPVIASRNAGKVYQLTSSRVFSTGKFGEGEGVDDWDKSVKSFSGAPSDDFGWDSVSSWSTGLTKEHFDGEAVSQKTGGEDTSQSSVVSGLQEIEDKLKELEAEQTKSKAFVDGWGQRMKELSVLMKQVREPGARGSYLKDSEKAEMYRLHKENPEVYTVERLAKDYRIMRQRVHAILWLKETEEEEEKKLGHPLDDSVELLLDSFPEFFNSHDREFHVASLPYKPDFKVMPEGWDGTTRDSDEVHYEISMKEDEMLYQEFLQRLNFNKKKVAGEVYRHKYSRRRSANGWNFTVEKLGPRGKRGGGGGWKFVSLPDGSSRPLNEMEKMYVKRETPRRRRKILP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1513139 1515104 + Bda024571.1 Bda08g00162 11018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00162 380 Coils Coil 121 148 - -
Bda08g00162 380 PANTHER MUCIN-LIKE PROTEIN 1 380 - -
Bda08g00162 380 PANTHER GB|AAC32909.1 1 380 - -
Bda08g00162 380 Pfam Eukaryotic mitochondrial regulator protein 175 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00162 - - - qsu:111987057 535.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00162 Bda-Chr8:1513139 Bda11g01224 Bda-Chr11:12611672 3.74E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1284 Blo01g00188 . . Bda08g00162 . . . Bma05g01162 . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0860 Cone11ag0646 . . . . . . . . Bpe05g00969 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009267 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00162 Bda_Chr08 FPKM 7.016052 8.898519 4.394791 5.505869 4.386551 3.027102 4.880117 14.820278 13.047278