Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00226 ATGGGTCGAGGAAGAGTGGAGCTTAAGAGGATAGAGAACAAAATCAATCGACAGGTTACTTTCTCGAAGAGGAGAAATGGGTTGCTCAAGAAAGCTTATGAGCTTTCTGTTCTCTGCGATGCTGAGGTTGCTTTGATCATCTTCTCCAGTCGTGGCAAGCTTTATGAGTTTGGAAGTTCTGGGACCAGTCAAACACTAGAGAGATATCAAAGTTACAGCTTCTCCCATCAAGCCAGCACAGTTGAACGTGAAACACAGAATTGGTATCAAGAAGTAGCAAAGTTGAAAGCTAAATATGAATCACTACAACGTACTCAAAGGCGTTTGCTTGGGGAAGATCTTGGACCTCTAAACGTGAAGGAGCTTCAAGATCTTGAAAAACGGCTTGAAGGAACACTTGCACAAGCCAGGCAAAGAAAGGTTAAATGGTTCTTTTTTTTTTTTTTTTGA 450 41.56 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSSGTSQTLERYQSYSFSHQASTVERETQNWYQEVAKLKAKYESLQRTQRRLLGEDLGPLNVKELQDLEKRLEGTLAQARQRKVKWFFFFFF 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2229689 2234903 - Bda024639.1 Bda08g00226 11082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00226 149 ProSiteProfiles K-box domain profile. 85 149 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda08g00226 149 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Bda08g00226 149 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda08g00226 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda08g00226 149 Coils Coil 119 139 - -
Bda08g00226 149 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda08g00226 149 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda08g00226 149 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda08g00226 149 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda08g00226 149 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda08g00226 149 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 1 142 - -
Bda08g00226 149 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bda08g00226 149 Pfam K-box region 82 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda08g00226 149 Coils Coil 85 112 - -
Bda08g00226 149 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bda08g00226 149 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00442 Bda-Chr5:50343266 Bda08g00226 Bda-Chr8:2229689 9.88E-38 dispersed
Bda06g00261 Bda-Chr6:4487067 Bda08g00226 Bda-Chr8:2229689 5.42E-48 dispersed
Bda08g00226 Bda-Chr8:2229689 Bda13g01726 Bda-Chr13:40558652 4.15E-60 dispersed
Bda10g00169 Bda-Chr10:5046312 Bda08g00226 Bda-Chr8:2229689 4.70E-31 dispersed
Bda13g00714 Bda-Chr13:8487005 Bda08g00226 Bda-Chr8:2229689 3.15E-46 dispersed
Bda08g00226 Bda-Chr8:2229689 Bda07g01843 Bda-Chr7:35769626 2.39E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16240 PF01486 K-box 1.20E-20 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00226 K09264 - rcu:8258483 238.039