Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00229 ATGAGCACGAACCCAGCTGCCAGTAGCGGCGGATCAGGCTGCAGCGGAAGCGGCGGAGGAGGACCCTGCGGAGCCTGCAAGTTCCTGCGTAGAAAGTGCGTGCCGGGGTGCATATTCGCTCCGTACTTCGATTCAGAGCAAGGCGCCTCCCATTTTGCTGCGGTTCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGCTCCTCCTACATATTCCAGTCCACAAACGCCTCGACGCCGTCGTCACCATTTGTTACGAAGCTCAAGCTCGCTTAAGAGACCCTGTTTATGGCTGCGTCGCCCACATATTTGCCCTCCAACAGCAGTTAGTCAATCTTCAAGCGGAGCTCTCCTACTTACAGGCACAATTAGCAACCCTAGACCTTCCCCCGCCACCTCCTCCACCGCCGCCTCCGCCTCCTCCGCGACTCTCTATTGCCGACCTCCCATCTTCGGCCTCTACTCCAGCCTCCTATGACTTATCGACTCTTTTCGATCAAGTGGTTCAACCATCGTGGACTGGCCAGCACGGGTTACCCCGTCCGTTTGGATCCGGCAGCAGCTCGGTCCCGGTCGATGGTGGCGGGGGAGGTGGTGATCTTCAAGCGTTGGCAAGCGAACTTCTTAATAGACATGGCACTTCTACTCCATGTATCAATGCTTCATTGTCCACATCTCTCTAA 681 56.39 MSTNPAASSGGSGCSGSGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQLVNLQAELSYLQAQLATLDLPPPPPPPPPPPPPRLSIADLPSSASTPASYDLSTLFDQVVQPSWTGQHGLPRPFGSGSSSVPVDGGGGGGDLQALASELLNRHGTSTPCINASLSTSL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2288572 2289940 - Bda024643.1 Bda08g00229 11085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00229 226 MobiDBLite consensus disorder prediction 175 200 - -
Bda08g00229 226 MobiDBLite consensus disorder prediction 126 154 - -
Bda08g00229 226 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 212 - -
Bda08g00229 226 Coils Coil 102 122 - -
Bda08g00229 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 4 212 - -
Bda08g00229 226 MobiDBLite consensus disorder prediction 126 145 - -
Bda08g00229 226 Pfam Lateral organ boundaries (LOB) domain 22 120 IPR004883 -
Bda08g00229 226 ProSiteProfiles LOB domain profile. 21 123 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00229 Bda-Chr8:2288572 Bda15g00282 Bda-Chr15:5610058 1.52E-39 dispersed
Bda03g00899 Bda-Chr3:7850576 Bda08g00229 Bda-Chr8:2288572 2.58E-39 transposed
Bda10g00531 Bda-Chr10:39045475 Bda08g00229 Bda-Chr8:2288572 6.62E-50 transposed
Bda03g00898 Bda-Chr3:7849120 Bda08g00229 Bda-Chr8:2288572 7.02E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16241 PF03195 LOB 1.60E-38 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00229 K21994 - qsu:112017957 294.278