Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00229 | ATGAGCACGAACCCAGCTGCCAGTAGCGGCGGATCAGGCTGCAGCGGAAGCGGCGGAGGAGGACCCTGCGGAGCCTGCAAGTTCCTGCGTAGAAAGTGCGTGCCGGGGTGCATATTCGCTCCGTACTTCGATTCAGAGCAAGGCGCCTCCCATTTTGCTGCGGTTCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGCTCCTCCTACATATTCCAGTCCACAAACGCCTCGACGCCGTCGTCACCATTTGTTACGAAGCTCAAGCTCGCTTAAGAGACCCTGTTTATGGCTGCGTCGCCCACATATTTGCCCTCCAACAGCAGTTAGTCAATCTTCAAGCGGAGCTCTCCTACTTACAGGCACAATTAGCAACCCTAGACCTTCCCCCGCCACCTCCTCCACCGCCGCCTCCGCCTCCTCCGCGACTCTCTATTGCCGACCTCCCATCTTCGGCCTCTACTCCAGCCTCCTATGACTTATCGACTCTTTTCGATCAAGTGGTTCAACCATCGTGGACTGGCCAGCACGGGTTACCCCGTCCGTTTGGATCCGGCAGCAGCTCGGTCCCGGTCGATGGTGGCGGGGGAGGTGGTGATCTTCAAGCGTTGGCAAGCGAACTTCTTAATAGACATGGCACTTCTACTCCATGTATCAATGCTTCATTGTCCACATCTCTCTAA | 681 | 56.39 | MSTNPAASSGGSGCSGSGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQLVNLQAELSYLQAQLATLDLPPPPPPPPPPPPPRLSIADLPSSASTPASYDLSTLFDQVVQPSWTGQHGLPRPFGSGSSSVPVDGGGGGGDLQALASELLNRHGTSTPCINASLSTSL | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2288572 | 2289940 | - | Bda024643.1 | Bda08g00229 | 11085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00229 | 226 | MobiDBLite | consensus disorder prediction | 175 | 200 | - | - | |
Bda08g00229 | 226 | MobiDBLite | consensus disorder prediction | 126 | 154 | - | - | |
Bda08g00229 | 226 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 4 | 212 | - | - | |
Bda08g00229 | 226 | Coils | Coil | 102 | 122 | - | - | |
Bda08g00229 | 226 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 4 | 212 | - | - | |
Bda08g00229 | 226 | MobiDBLite | consensus disorder prediction | 126 | 145 | - | - | |
Bda08g00229 | 226 | Pfam | Lateral organ boundaries (LOB) domain | 22 | 120 | IPR004883 | - | |
Bda08g00229 | 226 | ProSiteProfiles | LOB domain profile. | 21 | 123 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g00229 | Bda-Chr8:2288572 | Bda15g00282 | Bda-Chr15:5610058 | 1.52E-39 | dispersed | |
Bda03g00899 | Bda-Chr3:7850576 | Bda08g00229 | Bda-Chr8:2288572 | 2.58E-39 | transposed | |
Bda10g00531 | Bda-Chr10:39045475 | Bda08g00229 | Bda-Chr8:2288572 | 6.62E-50 | transposed | |
Bda03g00898 | Bda-Chr3:7849120 | Bda08g00229 | Bda-Chr8:2288572 | 7.02E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16241 | PF03195 | LOB | 1.60E-38 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00229 | K21994 | - | qsu:112017957 | 294.278 |