Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00233 ATGGATAGAAACAGAGAAGCTAGGAGGTCTACGATGGCGGCGACAAATGGGTTATCAAGGCGAAGACACAGAACTACCAGTCTCAGAGAGTCTCCGGAGGAAGATGTAGCGGTGGAGTTGCAGGAGACGGCGAGGCTCAGAGATCGAGGAAGCGGGAAGAAAGATCGAGACCGTGAGAGGGATCGTCTTAGTCGGAGCAAGAGGAGGAGAGCGGATAGATTAATGCATGGGAGTAATCGGGAAGATGTTGGGGAAGAGAGTTCAGAGGAGAGTGTAAATGACGAAGAAGACGAAGAAGACGAAGACTGTGGCGGTTCGGTGAGGATGCTTCCTCCCAACCCTTCGTCGATGCCGTCGATTTCTACTAACCGGAAAACCTTTCTTCCGGCGAAGACTTTCCGGACCGCCGCAACGTGGAAAGCGGCCGACGAAATGATCGGTGTGTCGGTTCCCAGAAAAGCGCGCTCAGTTTCTACGAAGAGGTCCCACGACTCATGGACTCCGACCGCCGGGGTTGGAAGCGCAGAGTTAAGCCACCGACAGGCTTCGACGTCTCCGGTGAGGCCGACCGTCGGTCTGGCGACGCCGTCTCTAGCTCCGGCGTCACCTTCTTCATCTAATGCTTCGGCGAGGAAGAAGCCGAAGTCGAACGGACCGAAACTGCGGCCGCCGAAAGTGTCGTCGAAGTCTTCTTCGGTTCAGGACGAGATCGAGATCGAGATAGCCGAGGTATTGTACGGAATGATGAGACAGCCTCAAGGGCCTTCTAAGCAAGACATCTCAGTCAGTGATTCAAGAGAAGCGAACAAAACGACGACGGACGCTAAATCTAGGGTTTCTTCTCCGATCTCGAATTCTTCCTCTGCTTTACCACTTCCGTCGTCGATTGTGACTCAAAATTCCGCTTCCATCATCTCTTCAATATCTGCGATTGCACCCAAGAGGAAAAAACCTCGACCCATCAAGTATGAGGACGAGAACCCCTCGAGTTTCAGTGGGAGGAATGGACCCATTTTCTCGACAACCAAACCCGAGACTGACCACTCAGCGATAACAGAGATATCCTCTCATAATCTCAAGAAATCTCCAGGATTCTTAGCTGAAAATGGCAGAGTTTCAGTCAATTCCGGAAGCTCTCATGTTGCTCCTGCCTCGTTGGAGGCGCAGATCGACCACATCAAGCCCGAAGTTAACGTTTTGTCAGATTCAAAACCTCTGGTTGCAGAATCAAATGGTAAAGATTTGGGTGTGACGAAGGAGGAGCCTCAATCGCCCAAAAATGGAACTCCAGTTCTCATTTTGAATAACAACAATCGGGATGAGATGACGTCGACAGAGCCTCATTCGTCCATGGCGGAATTCCAGAATCAGAGAGAAGAGAAGTTCCAAATAGATCTGATGGCTCCTCCTCCATCGCGATCATCTCCAGAAAGAAATGGCGAGATTGATTTTGTGGCTGTAGATCCGAAATCTATGGTCACTGATGCAGAAATGGAAATAAATAAGGCTAAGATGAAGGAAGACGATAAAGCGTCGAAAATAGGAAAAGAAGATGAAGTTAACGTGGAGGCCAAAGCTAAATCTGAGGATGCCGATTCTAGAAATCATCTTGTCATGATTAGTAAAGATAGGCTTCCTCCTGATTTGGACAAAACTGAAACAGAGACTGGCTATGGAGGTTTGAGCAGTAATAAGCTAAACAGGCTTGCCCAGAAGCAGCTCCAACCTTCTTCAATCTCAGACAAATCTGGCCAAGCTAATTCTCTTCCTCTGCCCATGTCCGTGGCCGGCTGGCCGAGTGGGCTTCCTCCCATGGGGTATGTGACTCCTCTGCAAGGAGTTGTATCCATGGATGGAAGCTCTGTTACATCTACAGCAGCTATTCAACCGCCGAATTTACTCTTTCCTCCGACCCGGCAGAAGAGATGTGCAACCCATTGCTACATTGCTAGAAACATTTGTTATCATCAGCAAATTGCTCGGATGAATCAGTTCTGGCCGGCTGCTCCCGGCTCAGCTTCTATGTTTGGGGCCAAGCACTGTAATTTGAATGTCTTACCCTCTTCGGATTTTCATGGAAGTCTTCCGGGTAAGAGCACGAGCTCAATGCAAGACAAAGCTCAGAGTCTACCCACTTTCTCTGCTCAGTCTGGAAAGGACAACAAGTCTCCTCAACCAACCGCCATTGTTGACGTTTCTCAGAGAAAGCAAATTCTAGTCCAGCAATCTTTACCTCCAGGAGCTCCTAGTAATATTCTGGGTCCGGCTTTTATCTTTCCGTTGAACCAACAACAGGCTGCAGCCGCGTCCGGCCGACCTGGCTCAGTGAAATCACCGTCCGGCGGAGCTATCTCCTCTGCTACTTCGAGTTCAGCTTCCATGAGTGGGTCTGCCGGAGCTTCCATTGCAGGACCTACTATGAGCTTCAATTATCCCAATATGCCAGTCAATGAGGCACAGTACTTAGCCTTCTTGCAGAACAATGGCTATTCTTTTCCAATCCCGTCTCATGTTGGTGCTCCGCCTGGATATAGAGGAGCTCATCCTCCTCCGGCAATGCCTTTTTTTAACGGCTCATTCTATTCTTCCCAAATGATTCATCCTCAACCTTCCAGTCAGACACAGCTGAGTCAACAAGGTCCTCAGAGCACTGCAGTTGCCGGCAGTGGTTCTTCGAATCAGAAGCATTTACAGAACCAGCAACCGAGATCCCATTCCGGAGGAGTTTATGGTGGTGGTGGAAATTTACAAGGCTTTCCTTCCTCCAAAAACCAGGCCTCTCAACCACTGCAGCCGCCTCGGCCTCAACAGCTCGAGTCCGAGATTGGTGGGGAAGAAAGCCCATCAGCAGCCGATCGGGTTTCGCGATCAAATATGAATGTTTATAGTCAGAATTTCCCCATGCCAATTCACCCGCCTCCGAATTTTACTGTGATTAATCCTCCTGTCCCCATTTCCGGCAGTGGTAAAAAGAAGCATTCTCTACCACAGGGTGGCTCGAAAACAGGAGTCGAGCCCGCTCAAGCTTTTGCCTTATCTTTTGCCTCCATTAATGGTGCTTCCACCACAACTGGAATTGATCTCTCGACTATTGCACCAAATCATCCTATGTCTCAGAACCTTCCAGAACTTACCAGACAGTCATATCAGTTTATGGCGGCGGCAGCAGCTGCAGCTGCGGCCCAGGCGGCACAGCCGAAGAAAAGCTACCCAGATGGAAATGGGGATAATTCTTCGAGTGTGGAGGAAGATAGAAAAACAATGGCAGCAAAAACTCCAACTCCAACTCCGACTATGGTTCAGTCCATTGCTTTCACCAGAACAGATTTATTGGATGCATCATCTGTTTCCACCATTACCGGTGGGACTACAATGGTTGATAGCTTGGCTCGAAGGCCTTCTGGGTCTACAATTAACCCTCAAGGAGCCTCCATTCCTCAGCAGCAAATGCAGAGAAATCAGCAGCAGATGATGCTGCAGAAACAGCAGCAATTTGCAGCCACTGCAGCTGCCCGGAACAAGGTCCCACCGACCAGTAATGGTGGTGGCAGTGTTTATTCTGATCACATTCCGTCTTCGTCGGCAATAGCTGCAAAATTTCCTGATTCCATGTCCTCGTTTCCTCAAAATCTAGTCCAAAGTAACACCACCACCAGTCCAGCTCAATCTCCCCAGTGGAAGAATTCAGCGAGAGCAACTTCTCAGGTTCCTACTCAATCTGTTTCTTCATCGTCGTCTTCTACGAAAAATCTTCCTCAGCAGCCGAACCGACCCCAGCAAAGCCACACACAGATTTCTTTTGCAGCTAATCCTAAATCGTCTTTGCAAAATCAAGCACAACAAGCTGTTAGTAGCAGTCAAGCTCCATCTCCTCCATTAATGGTTGGCTCTCCCACCTCTTCCATCTCAAAAAGTTCAGGTGGAAGCCCAAGACTAGCTACTTCTACAACCACAGGAATCAAAACTGGCCAAGCTCCAATGTCGACATCTCAGCAAATCAAGAATTCCCAGCCATTGCCGACCCAGAAGTCGATTCTTGGAAATCCTAATGGCACCGGCACCTCTACATCGAGCTCGGGAGGCAAAACCCAGCAACAGCCTCAGCAGCAGCATTTATCAAAGCAGTCACTGCAACAAGCTCAGCTCTTCTTCTCTCACCCCTACATGCAGGCTCAAGCTTCTCATTCCACAAGCCCTTCAGCTGCCTCAGCTGCTGGCGGGTATTATCTCCAAAGGCGGCGGCCGGAGTCACAATCGACTGCTCCACAGGGCCAATCAGCGACAACTTCAGGTGGCATGTTATCGTTATGCTCTCCTATCACTCTCGATCCAGCAAAAGCTGTTACCGGAGCATCAGCCAGGGAACAACCCAAAAACTGGAGGTGGCTTACCGGCACAGACCGTCCTCCACCCGGCTCAGTTTTCCGCTACACATTCATCAGGAAATTCACATCATTCCCTGCCGGCAGGTTTCCAATACATTCATGCTGTTTCCCCTGCAGCAGTTCAGGTGAAGCCAACTGA 4524 49.65 MDRNREARRSTMAATNGLSRRRHRTTSLRESPEEDVAVELQETARLRDRGSGKKDRDRERDRLSRSKRRRADRLMHGSNREDVGEESSEESVNDEEDEEDEDCGGSVRMLPPNPSSMPSISTNRKTFLPAKTFRTAATWKAADEMIGVSVPRKARSVSTKRSHDSWTPTAGVGSAELSHRQASTSPVRPTVGLATPSLAPASPSSSNASARKKPKSNGPKLRPPKVSSKSSSVQDEIEIEIAEVLYGMMRQPQGPSKQDISVSDSREANKTTTDAKSRVSSPISNSSSALPLPSSIVTQNSASIISSISAIAPKRKKPRPIKYEDENPSSFSGRNGPIFSTTKPETDHSAITEISSHNLKKSPGFLAENGRVSVNSGSSHVAPASLEAQIDHIKPEVNVLSDSKPLVAESNGKDLGVTKEEPQSPKNGTPVLILNNNNRDEMTSTEPHSSMAEFQNQREEKFQIDLMAPPPSRSSPERNGEIDFVAVDPKSMVTDAEMEINKAKMKEDDKASKIGKEDEVNVEAKAKSEDADSRNHLVMISKDRLPPDLDKTETETGYGGLSSNKLNRLAQKQLQPSSISDKSGQANSLPLPMSVAGWPSGLPPMGYVTPLQGVVSMDGSSVTSTAAIQPPNLLFPPTRQKRCATHCYIARNICYHQQIARMNQFWPAAPGSASMFGAKHCNLNVLPSSDFHGSLPGKSTSSMQDKAQSLPTFSAQSGKDNKSPQPTAIVDVSQRKQILVQQSLPPGAPSNILGPAFIFPLNQQQAAAASGRPGSVKSPSGGAISSATSSSASMSGSAGASIAGPTMSFNYPNMPVNEAQYLAFLQNNGYSFPIPSHVGAPPGYRGAHPPPAMPFFNGSFYSSQMIHPQPSSQTQLSQQGPQSTAVAGSGSSNQKHLQNQQPRSHSGGVYGGGGNLQGFPSSKNQASQPLQPPRPQQLESEIGGEESPSAADRVSRSNMNVYSQNFPMPIHPPPNFTVINPPVPISGSGKKKHSLPQGGSKTGVEPAQAFALSFASINGASTTTGIDLSTIAPNHPMSQNLPELTRQSYQFMAAAAAAAAAQAAQPKKSYPDGNGDNSSSVEEDRKTMAAKTPTPTPTMVQSIAFTRTDLLDASSVSTITGGTTMVDSLARRPSGSTINPQGASIPQQQMQRNQQQMMLQKQQQFAATAAARNKVPPTSNGGGSVYSDHIPSSSAIAAKFPDSMSSFPQNLVQSNTTTSPAQSPQWKNSARATSQVPTQSVSSSSSSTKNLPQQPNRPQQSHTQISFAANPKSSLQNQAQQAVSSSQAPSPPLMVGSPTSSISKSSGGSPRLATSTTTGIKTGQAPMSTSQQIKNSQPLPTQKSILGNPNGTGTSTSSSGGKTQQQPQQQHLSKQSLQQAQLFFSHPYMQAQASHSTSPSAASAAGGYYLQRRRPESQSTAPQGQSATTSGGMLSLCSPITLDPAKAVTGASAREQPKNWRWLTGTDRPPPGSVFRYTFIRKFTSFPAGRFPIHSCCFPCSSSGEAN 1507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2333611 2339077 + Bda024649.1 Bda08g00233 11089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00233 1507 MobiDBLite consensus disorder prediction 314 348 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 779 799 - -
Bda08g00233 1507 PANTHER PROTEIN TIME FOR COFFEE 1 1453 IPR039317 GO:0042752
Bda08g00233 1507 MobiDBLite consensus disorder prediction 87 103 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 1413 1432 - -
Bda08g00233 1507 PANTHER PROTEIN TIME FOR COFFEE 1 1453 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 1207 1377 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 1412 1432 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 248 293 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 328 348 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 406 454 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 254 293 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 860 906 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 23 86 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 917 935 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 1126 1187 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 694 726 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 1064 1096 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 139 234 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 161 213 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 769 799 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 112 127 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 1 127 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 984 1003 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 860 954 - -
Bda08g00233 1507 MobiDBLite consensus disorder prediction 422 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00233 - - - vvi:100256257 1199.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00233 Bda-Chr8:2333611 Bda10g00584 Bda-Chr10:39834600 1.78E-10 dispersed
Bda08g00233 Bda-Chr8:2333611 Bda04g00562 Bda-Chr4:54315598 9.29E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00233 Bda_Chr08 FPKM 1.155996 1.546756 2.263025 1.187761 1.603116 1.435229 1.188457 3.622298 3.884516