Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00235 ATGATGCTGGAAAGCATGAACAGTGATAGCAATGAAGAGAAACTTAGCACATTCATTAAGCATGGGAGTAAATCACTGAAGAATAGAGTTAGTGAAAATGATTTTTCTTCAGTAAATTTGAAAGGTATGAATTCTAGTAATAGCTTTCGTGATGGTGTTGAAAAACCATCATGTGGATCTAACTCCCACATTCTTCAAGGAAGAAAAAGAAGAAAACTCGGGTTGCTGGTTCGTGGTTCCAACAAGGGACCAAATTCAGGGGATGACAGCTTTATCCCTTATACTGGAAAAAGAACTATTCTTTCCTGGCTAATTGACTCTGAAACAGTTCATTTAAGCCAAAAAGTTCGATACATGAACCGTAGACAAACCAGAGTAATGCTGGAGGGATGGATTGCCAGAGACGGTATTCATTGTGGTTGCTGTAGTAAGATTCTTACTGTTTCTAAGTTTGAGCTACATGCCGGAAGTAAACTTCGCCAACCTTTTCAAAACATAGTTTTGGAATCTGGGGTTTCTCTTTTGGAATGTCAGATAGATGCGTGGAATAGGCAAGAGGAGTCTAAACGCCTTAGTTTTTACTCAATTGAAATGGATGGTGCTGATCCAAATGATGACACATGTGGAATTTGTGGAGATGGTGGGGATTTAATTTGTTGTGATGGTTGTCCATCAACTTTTCATCTGAGCTGTTTAGACATACAGATTCCCCCTGGTGATTGGCACTGTCCAAATTGTACTTGCAAATATTGTGGCATCACAAGCTTCGATGATTATGAATCAGATGATATTTCTACTACTGAGCTAAGTACTTGCAATATGTGTGAGAAAAAATATCACATATCATGCATCCAGGATATGGATTTGGGTGTTCCTCTTAATGGCCTACAAACGTCATTTTGTGGGCAGAAATGCCAAGAGCTCTTTGGCCATTTGCAGAAGCATCTGGGCGTCAAGCATGATCTAGATGGAGGATTTTCATGGTCCCTTATTCGTAGAACAAACGAAGACTGCGTTTCATCAGTTCGTGGACTCCCTCACCGGGTGGAATGGAATTCTAAACTTGCTGTTGCATTAACAATTATGAATGAATGCTTTTTACCTGTTGTTGACAGGAGGAGTGGAATCAACTTAATCATAATGTTCTGTATAATAGTGGATCGAATTTTAATCGCCTCAATTATAGTGGTTTTTACACTGCTATTCTGGAGAGGGGTGATGAAATCATCTCCGTCGCATCTATCAGGTTCCACGGGACTAAGTTAG 1266 39.73 MMLESMNSDSNEEKLSTFIKHGSKSLKNRVSENDFSSVNLKGMNSSNSFRDGVEKPSCGSNSHILQGRKRRKLGLLVRGSNKGPNSGDDSFIPYTGKRTILSWLIDSETVHLSQKVRYMNRRQTRVMLEGWIARDGIHCGCCSKILTVSKFELHAGSKLRQPFQNIVLESGVSLLECQIDAWNRQEESKRLSFYSIEMDGADPNDDTCGICGDGGDLICCDGCPSTFHLSCLDIQIPPGDWHCPNCTCKYCGITSFDDYESDDISTTELSTCNMCEKKYHISCIQDMDLGVPLNGLQTSFCGQKCQELFGHLQKHLGVKHDLDGGFSWSLIRRTNEDCVSSVRGLPHRVEWNSKLAVALTIMNECFLPVVDRRSGINLIIMFCIIVDRILIASIIVVFTLLFWRGVMKSSPSHLSGSTGLS 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2359320 2362584 + Bda024650.1 Bda08g00235 11091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00235 421 Pfam PHD-finger 208 249 IPR019787 -
Bda08g00235 421 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Bda08g00235 421 ProSitePatterns Zinc finger PHD-type signature. 208 246 IPR019786 -
Bda08g00235 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 267 IPR013083 -
Bda08g00235 421 CDD PHD2_CHD_II 208 246 - -
Bda08g00235 421 Pfam Tify domain binding domain 130 180 IPR032308 -
Bda08g00235 421 SMART PHD_3 250 306 IPR001965 -
Bda08g00235 421 SMART PHD_3 207 247 IPR001965 -
Bda08g00235 421 ProSiteProfiles Zinc finger PHD-type profile. 205 249 IPR019787 -
Bda08g00235 421 PANTHER PHD FINGER FAMILY PROTEIN 11 379 - -
Bda08g00235 421 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 11 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00235 - - - cpep:111807565 555.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00235 Bda-Chr8:2359320 Bda10g00577 Bda-Chr10:39749334 4.08E-116 dispersed
Bda09g01425 Bda-Chr9:46071115 Bda08g00235 Bda-Chr8:2359320 2.98E-08 dispersed
Bda08g00235 Bda-Chr8:2359320 Bda01g00592 Bda-Chr1:32934254 2.15E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00235 . 8 379 PHD Transcription Factor Family AT1G05380 54.8 1.5e-114 411.4
Bda03g01749 BCT 22 844 PHD Transcription Factor Family AT3G53680 53.6 2.2e-245 845.5
Bda14g00310 . 437 566 PHD Transcription Factor Family AT3G53680 53.8 4.0e-37 153.7
Bda15g00213 . 292 421 PHD Transcription Factor Family AT3G53680 53.1 3.4e-36 150.6
Bda08g00235 . 57 379 PHD Transcription Factor Family AT4G14920 59.6 4.0e-112 403.3
Bda03g00173 . 139 382 PHD Transcription Factor Family AT5G58610 54.0 4.2e-75 280.0
Bda10g01164 . 10 625 PHD Transcription Factor Family AT5G22260 50.1 3.7e-174 608.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16242 PF16135 TDBD 6.80E-21 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00235 Bda_Chr08 FPKM 8.874377 9.589769 21.947857 17.10458 12.557145 9.913584 12.153252 25.54563 24.205046