Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00235 ATGATGCTGGAAAGCATGAACAGTGATAGCAATGAAGAGAAACTTAGCACATTCATTAAGCATGGGAGTAAATCACTGAAGAATAGAGTTAGTGAAAATGATTTTTCTTCAGTAAATTTGAAAGGTATGAATTCTAGTAATAGCTTTCGTGATGGTGTTGAAAAACCATCATGTGGATCTAACTCCCACATTCTTCAAGGAAGAAAAAGAAGAAAACTCGGGTTGCTGGTTCGTGGTTCCAACAAGGGACCAAATTCAGGGGATGACAGCTTTATCCCTTATACTGGAAAAAGAACTATTCTTTCCTGGCTAATTGACTCTGAAACAGTTCATTTAAGCCAAAAAGTTCGATACATGAACCGTAGACAAACCAGAGTAATGCTGGAGGGATGGATTGCCAGAGACGGTATTCATTGTGGTTGCTGTAGTAAGATTCTTACTGTTTCTAAGTTTGAGCTACATGCCGGAAGTAAACTTCGCCAACCTTTTCAAAACATAGTTTTGGAATCTGGGGTTTCTCTTTTGGAATGTCAGATAGATGCGTGGAATAGGCAAGAGGAGTCTAAACGCCTTAGTTTTTACTCAATTGAAATGGATGGTGCTGATCCAAATGATGACACATGTGGAATTTGTGGAGATGGTGGGGATTTAATTTGTTGTGATGGTTGTCCATCAACTTTTCATCTGAGCTGTTTAGACATACAGATTCCCCCTGGTGATTGGCACTGTCCAAATTGTACTTGCAAATATTGTGGCATCACAAGCTTCGATGATTATGAATCAGATGATATTTCTACTACTGAGCTAAGTACTTGCAATATGTGTGAGAAAAAATATCACATATCATGCATCCAGGATATGGATTTGGGTGTTCCTCTTAATGGCCTACAAACGTCATTTTGTGGGCAGAAATGCCAAGAGCTCTTTGGCCATTTGCAGAAGCATCTGGGCGTCAAGCATGATCTAGATGGAGGATTTTCATGGTCCCTTATTCGTAGAACAAACGAAGACTGCGTTTCATCAGTTCGTGGACTCCCTCACCGGGTGGAATGGAATTCTAAACTTGCTGTTGCATTAACAATTATGAATGAATGCTTTTTACCTGTTGTTGACAGGAGGAGTGGAATCAACTTAATCATAATGTTCTGTATAATAGTGGATCGAATTTTAATCGCCTCAATTATAGTGGTTTTTACACTGCTATTCTGGAGAGGGGTGATGAAATCATCTCCGTCGCATCTATCAGGTTCCACGGGACTAAGTTAG 1266 39.73 MMLESMNSDSNEEKLSTFIKHGSKSLKNRVSENDFSSVNLKGMNSSNSFRDGVEKPSCGSNSHILQGRKRRKLGLLVRGSNKGPNSGDDSFIPYTGKRTILSWLIDSETVHLSQKVRYMNRRQTRVMLEGWIARDGIHCGCCSKILTVSKFELHAGSKLRQPFQNIVLESGVSLLECQIDAWNRQEESKRLSFYSIEMDGADPNDDTCGICGDGGDLICCDGCPSTFHLSCLDIQIPPGDWHCPNCTCKYCGITSFDDYESDDISTTELSTCNMCEKKYHISCIQDMDLGVPLNGLQTSFCGQKCQELFGHLQKHLGVKHDLDGGFSWSLIRRTNEDCVSSVRGLPHRVEWNSKLAVALTIMNECFLPVVDRRSGINLIIMFCIIVDRILIASIIVVFTLLFWRGVMKSSPSHLSGSTGLS 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2359320 2362584 + Bda024650.1 Bda08g00235 11091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00235 421 Pfam PHD-finger 208 249 IPR019787 -
Bda08g00235 421 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Bda08g00235 421 ProSitePatterns Zinc finger PHD-type signature. 208 246 IPR019786 -
Bda08g00235 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 267 IPR013083 -
Bda08g00235 421 CDD PHD2_CHD_II 208 246 - -
Bda08g00235 421 Pfam Tify domain binding domain 130 180 IPR032308 -
Bda08g00235 421 SMART PHD_3 250 306 IPR001965 -
Bda08g00235 421 SMART PHD_3 207 247 IPR001965 -
Bda08g00235 421 ProSiteProfiles Zinc finger PHD-type profile. 205 249 IPR019787 -
Bda08g00235 421 PANTHER PHD FINGER FAMILY PROTEIN 11 379 - -
Bda08g00235 421 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 11 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00235 Bda-Chr8:2359320 Bda10g00577 Bda-Chr10:39749334 4.08E-116 dispersed
Bda09g01425 Bda-Chr9:46071115 Bda08g00235 Bda-Chr8:2359320 2.98E-08 dispersed
Bda08g00235 Bda-Chr8:2359320 Bda01g00592 Bda-Chr1:32934254 2.15E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16242 PF16135 TDBD 6.80E-21 No_clan Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00235 - - cpep:111807565 555.829