Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00257 ATGCAGGTCCCTAATTCTAAAGAAGATGCTCCTGAGATATTGGAAGGTGTTGAAGAGTCCGAAAAATTGAACTCCCCCAAGTTGAGTTTGGTTGGTGGTGGCGAATGTGATGTTGAGGATGATTCGGTTCTCGACGTTTCTGGGAAAAGTTTGGACTTTCCTTTGGAGAAGAGTTTGGAAGATACGGTGAAGGGTTTGTATGTGTATAGAAACGTGTTTAATTTGATTCCAGAATCTCTTGGCGGATTAGGGCAGTTGAGGACGTTGAAGTTTTTTGGAAATGAGATTAATTTGTTTCCGTCGGAGTTGAAGAATTTGGTGGGGTTGGAATGCTTGCAGGTGAAAATGTCTTCACCGAGATTCGGTGGGTTACCCTTGCATATGATCAAGGGTTTGAAGGAGCTTGAGCTGTCTAAAGTGCCACCACGGCCTTCAGCTTTTCCCATTCTTAGTGAGATTACTAGTCTCAAGTGCTTGAAGAAGCTCTCTATATGTCACTTCTCCATAAGATTCCTTCCTTCAGAAATTGGCTGCTTAAATAATTTGGAGTTTCTAGATCTCTCCTTCAATAAAATCAAGACTTTGCCCTCCGAAATAAGTTATTTGAATGACTTGATATCATTGAAAGTTGCTCATAATAAATTGGTGGAATTACCATCAGCTTTGTCCTCCCTGCAAAAGTTGAAGAACTTGGACCTGTCAAATAATAGGTTAACTTCATTGGGATCTCTTGACCTTCCATCAATGCATAACCTTCAAAATCTTAATCTAAAGTTCAATAAGCTTCTGAATAATTCTAGCATACCTGCCTGGATATGCTGCCAATTAGGAGGAAATGATGGATATACATCAAATGGTGATTGTACAAGTTCTATTGTTGAAATGGATTTATATAATGAAAACAATGACAAGAGTGCAAAATTTTCTCACAAAGGTGGCACCCACCATACATTATCAAGTTTATTAGGCGGACTTTCATCAAACAGTAGATGTTTTGCTACTCGAAGGTCAGGTAGAAGGTGGAAGCGACAATATTATTTACAGCAGAAAGCTCGTCAAGAACGTTTAAATAACAGTAGGAAATGGAAAGGAGTAGATCAGTCTGACATTTTGACGGTTGGGCAAAATGAAAATTACCAGGCTTTCAGTTTAAGCACCTTTTCTTCTGATTCTGGCGCAGAAGCTGCATCATCGATTCTTTGTCCCAATGATGATAAAGCTTTACAATTTACAGATGCTGAAAATGATAGCTCACTTGAAGGTCTTGAGAACAGTGAAGTCTGCTCTGAAGAAAAAGTTTCTGCAGAAAACTGTTGTTGCGTTGCAGCAAGTGAAGGTAGTGAAAATGAATGTTGTGAGAATGATCCATCTTTATCCTCCACTCACAAGAGTGGCGAAGAGCAAGATGATATTTCATCTCTGGAGACACCATGCAAGTATAGTAGTATATCCTTTTGTACCACTGATGATTATCTACCGGATGGTTTCTATGATGCGGGACGCGACCGACCATTCATGTCAATGCAGAGCTATGAAGAAAATATCCACCTTGATGCACGGGAAGTTATTTATTTGGACAGAGACCGAGATGAAATGTTGGATGCTATTGTACTTTCTGCTCAGACAATGATGCATCGTTTAAAACAGATAAATGGTGTCACAAATGATGGGAATCAATCTAATGTTGATGATCTATTGACTGCTTCATTGCTTGCGTTGTTTGTATCGGATCATTTTGGAGGCAGTGATAAAAGTGCGATTGTAGAAAGGACTCGGAAAGCTGTGTCTGGTTCTAACTATGAGAATCCTTTCGTTTGTACATGTTCAACTGGAAACAGGGGCTGGATGGACATGTCTGCTGGACCAATGGGGCATGTGGTGGAAGACTTAATTTTTTCAGATATGTGTGAAAAATCTCTGCAGTCTATAAAAGCTAGACGAAATTCCATAATTATTCCTTTAGGGGAAGTATCATTTGGCGTATGTAGACATAGAGCATTGTTGATGAAGGTTCGTACTTTGGAAGTTTCTGTCTCTGCTGTGGGTCAAATTAGGAAATTTGAGTATAGCTGGCTAGGGGAAGTAAGAATGTTAGGTGCTTTAAAACACTCATGCATAATAGAGATGTATGGACATCAGCTATCTTGCAAGTGGATTCCTTCTGTGGATGGAGAACCAGAACTTCGTCTCCTACAGTCTTCAATATTTTTAGAGTACATAAAAGGAGGATCGTTGAAGAGTTACATTGAGAAGTTGTCTAAGGCTGGGGAGAAAAGTGTTCCAGTTCACTTAGCGATATGTATTGCTAGAGATGTTGCATGTGCTTTAGCAGCCATGCATTCGAGACATATCATACATCGTGACATAAAAAGTGAGAACATATTGATTGATTTGGATAAGAAGAGAGCTGATGGTTCTCCTTTAGTGAAGCTGTGTGATTTTGATAGAGCTGTCCCTCTTCGTTCTTCCTTGCACACCTGCTGTATTGCTCATTTTGGGGTACCTGCCCCAGATGTTTGTGTTGGAACTCCTCGTTGGATGGCCCCAGAGGTTCTGCAGGCAATGCATCGAGGCAATAAATACGGAGTGGAAGTGGATATATGGTCATTTGGATGCCTATTATTGGAACTATTGACACTGCAAATCCCATACTTAGAATTATCTGAGATGCAGTTTTGTGACCAACTTAAGATGGGAAAACGTCCACGATTGACCGATGAGCTAGAAACATTGGTAACCTTAGACGACAGCTCAATAACTCGCTCTGCTACAGATCGAAGCAAAAACTCGGAAGCCGAACTGAATGATCTTAAATTCCTGATTAATCTATACCACCAATGTACTCTGGAGAATCCTACTGACAGGCCAACAGCTGATAATCTTTACGAATCATTGTTGGCAAGAACAAGCAAGCTGTCCGGCTGA 2925 40.34 MQVPNSKEDAPEILEGVEESEKLNSPKLSLVGGGECDVEDDSVLDVSGKSLDFPLEKSLEDTVKGLYVYRNVFNLIPESLGGLGQLRTLKFFGNEINLFPSELKNLVGLECLQVKMSSPRFGGLPLHMIKGLKELELSKVPPRPSAFPILSEITSLKCLKKLSICHFSIRFLPSEIGCLNNLEFLDLSFNKIKTLPSEISYLNDLISLKVAHNKLVELPSALSSLQKLKNLDLSNNRLTSLGSLDLPSMHNLQNLNLKFNKLLNNSSIPAWICCQLGGNDGYTSNGDCTSSIVEMDLYNENNDKSAKFSHKGGTHHTLSSLLGGLSSNSRCFATRRSGRRWKRQYYLQQKARQERLNNSRKWKGVDQSDILTVGQNENYQAFSLSTFSSDSGAEAASSILCPNDDKALQFTDAENDSSLEGLENSEVCSEEKVSAENCCCVAASEGSENECCENDPSLSSTHKSGEEQDDISSLETPCKYSSISFCTTDDYLPDGFYDAGRDRPFMSMQSYEENIHLDAREVIYLDRDRDEMLDAIVLSAQTMMHRLKQINGVTNDGNQSNVDDLLTASLLALFVSDHFGGSDKSAIVERTRKAVSGSNYENPFVCTCSTGNRGWMDMSAGPMGHVVEDLIFSDMCEKSLQSIKARRNSIIIPLGEVSFGVCRHRALLMKVRTLEVSVSAVGQIRKFEYSWLGEVRMLGALKHSCIIEMYGHQLSCKWIPSVDGEPELRLLQSSIFLEYIKGGSLKSYIEKLSKAGEKSVPVHLAICIARDVACALAAMHSRHIIHRDIKSENILIDLDKKRADGSPLVKLCDFDRAVPLRSSLHTCCIAHFGVPAPDVCVGTPRWMAPEVLQAMHRGNKYGVEVDIWSFGCLLLELLTLQIPYLELSEMQFCDQLKMGKRPRLTDELETLVTLDDSSITRSATDRSKNSEAELNDLKFLINLYHQCTLENPTDRPTADNLYESLLARTSKLSG 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2636862 2643873 + Bda024684.2 Bda08g00257 11113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00257 974 Pfam Ethylene-responsive protein kinase Le-CTR1 624 672 - -
Bda08g00257 974 ProSiteProfiles Leucine-rich repeat profile. 181 202 IPR001611 GO:0005515
Bda08g00257 974 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 670 970 - -
Bda08g00257 974 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 64 302 - -
Bda08g00257 974 Gene3D Ribonuclease Inhibitor 32 309 IPR032675 -
Bda08g00257 974 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Bda08g00257 974 Gene3D Transferase(Phosphotransferase) domain 1 633 972 - -
Bda08g00257 974 PRINTS Leucine-rich repeat signature 182 195 - -
Bda08g00257 974 PRINTS Leucine-rich repeat signature 225 238 - -
Bda08g00257 974 SMART serkin_6 648 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00257 974 SMART LRR_bac_2 179 198 - -
Bda08g00257 974 SMART LRR_bac_2 202 221 - -
Bda08g00257 974 SMART LRR_bac_2 225 244 - -
Bda08g00257 974 Pfam Protein kinase domain 687 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00257 974 PANTHER BNAC08G43810D PROTEIN 670 970 - -
Bda08g00257 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Bda08g00257 974 PANTHER BNAC08G43810D PROTEIN 64 302 - -
Bda08g00257 974 PANTHER BNAC08G43810D PROTEIN 468 670 - -
Bda08g00257 974 MobiDBLite consensus disorder prediction 1 21 - -
Bda08g00257 974 ProSiteProfiles Protein kinase domain profile. 648 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00257 974 SUPERFAMILY Protein kinase-like (PK-like) 656 965 IPR011009 -
Bda08g00257 974 SMART LRR_typ_2 83 105 IPR003591 -
Bda08g00257 974 SMART LRR_typ_2 179 202 IPR003591 -
Bda08g00257 974 SMART LRR_typ_2 249 275 IPR003591 -
Bda08g00257 974 SMART LRR_typ_2 225 248 IPR003591 -
Bda08g00257 974 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 468 670 - -
Bda08g00257 974 SMART LRR_sd22_2 179 204 - -
Bda08g00257 974 SMART LRR_sd22_2 225 246 - -
Bda08g00257 974 SUPERFAMILY RNI-like 64 265 - -
Bda08g00257 974 MobiDBLite consensus disorder prediction 448 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00257 - - - qsu:112016411 754.207
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00864 Bda08g00257 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00257 Bda-Chr8:2636862 Bda11g00746 Bda-Chr11:7499350 5.18E-26 dispersed
Bda03g00864 Bda-Chr3:7508214 Bda08g00257 Bda-Chr8:2636862 8.78E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69755 PF00069 Pkinase 2.30E-36 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00257 Bda_Chr08 FPKM 61.258339 65.197304 54.613194 54.516689 73.918457 72.262993 73.700203 43.144165 41.407513