Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00266 TTGGGATGTTTGAAAATGGTTCGGGACGGTCATGTGGTGCCGGCCGACCCGCAGGCTTCGGTGGCGGCGAAGAAGAAATCGTCTCGGAGTTGGATGCTTTTGGATTCAACCGGCCAAGGTACCGTCATCGATGTCGACAAGTATGCTGTAATGCACCGGGTCCAGATTCATGCACGAGACCTTCGGATTCTAGATCCTTTGCTCTCTTATCCGTCCACCATTCTTGGCCGCGAGGGAGCCATTGTTCTTAATTTGGAGCATATCAAGGCAATTATTACCTCTGAAGAGGTTTTGCTCCGAGATCCAATGGATGAGAATGTTATCCCAGTTGTTGAAGAGCTGCAAAGGCGATTGCCTCCCAATAATGCCATACAGCTTCAAAAGCAAGAAGATGGGAAAGAGTATCCTGGTGGGCATAATGATGTTGAAGCGGGTGATGAAGATGATTCTCCATTTGAATTTCGAGCCCTAGAGGTAGCTTTAGAAGCCATTTGTAGTTTTCTTGCTGCACGAACAACAGAACTGGAGACTACAGCCTATCCTGCCTTAGATGAGCTCACCTCCAAAATTAGTAGCCGTAACTTAGACAGAGTTCGTAAACTGAAAAGTGCAATGACCAGGTTGACAGGAAGAGTTCAAAAGGTAAGGGATGAGCTTGAGCAGCTATTGGATGACGACGACGATATGACAGACCTTTACTTGACAAGAAAGTTAGCTGGGGCATCTTCTCCTGTTAGTGCCTCTGGCGTTCCTAATTGGTATCCTGCCTCTCCTACGATAGGTTCAAAAATATCAAGAGCAAGCAGAGCTAGCATCGCAACTGTTCGTGGAGACGATAATGATGTCGAAGAGCTTGAAATGTTGCTGGAGGCTTACTTTATGCAAATTGATGGCACGTTGAACAAATTAACAACGATGAGAGTCAATTGGAAACTGCTAACTATGAAGTGTAACGTGGGCAATAAGACACTACACTTAAAGGGCGACCCTAGTTTAGGGAAGACAAAAATCTCTATGAATGCTATGTTGCGCGAATACATAGATGACACAGAAGATTACATTAATATTCAGTGTAGTTGTAATTATCATTTCTCTCAACCTCGAACCCTCTGTTTGTTGCAGCTGGAGCTTTTTCTCAGTACAGGGACTGTTTGTTTGGCCATTTATGCTTTGGTGGCTGCCATTTTTGGCATGAATATCCCGTACACTTGGAATACCGGCCATAGTTACATGTTCAAATGGGTGGTCATCCTGACGACTGTTGGTTGTGCAATTCTATTCGTGATAGTTATTGCATATGCTCGCCACAAAGGTTTGGTGGGATCGTGA 1329 44.92 LGCLKMVRDGHVVPADPQASVAAKKKSSRSWMLLDSTGQGTVIDVDKYAVMHRVQIHARDLRILDPLLSYPSTILGREGAIVLNLEHIKAIITSEEVLLRDPMDENVIPVVEELQRRLPPNNAIQLQKQEDGKEYPGGHNDVEAGDEDDSPFEFRALEVALEAICSFLAARTTELETTAYPALDELTSKISSRNLDRVRKLKSAMTRLTGRVQKVRDELEQLLDDDDDMTDLYLTRKLAGASSPVSASGVPNWYPASPTIGSKISRASRASIATVRGDDNDVEELEMLLEAYFMQIDGTLNKLTTMRVNWKLLTMKCNVGNKTLHLKGDPSLGKTKISMNAMLREYIDDTEDYINIQCSCNYHFSQPRTLCLLQLELFLSTGTVCLAIYALVAAIFGMNIPYTWNTGHSYMFKWVVILTTVGCAILFVIVIAYARHKGLVGS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2739618 2749160 + Bda024695.2 Bda08g00266 11122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00266 442 PANTHER MAGNESIUM TRANSPORTER MRS2-I 6 307 - -
Bda08g00266 442 PANTHER MAGNESIUM TRANSPORTER MRS2-I 341 442 - -
Bda08g00266 442 CDD Mrs2_Mfm1p-like 31 439 IPR039204 -
Bda08g00266 442 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 341 442 IPR039204 -
Bda08g00266 442 MobiDBLite consensus disorder prediction 132 146 - -
Bda08g00266 442 Gene3D Magnesium transport protein CorA, transmembrane region 110 361 - -
Bda08g00266 442 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 378 430 IPR045863 -
Bda08g00266 442 MobiDBLite consensus disorder prediction 126 146 - -
Bda08g00266 442 Gene3D - 17 102 - -
Bda08g00266 442 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 307 IPR039204 -
Bda08g00266 442 Coils Coil 198 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00266 K16075 MRS2, MFM1; magnesium transporter - pop:7467525 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00266 Bda-Chr8:2739618 Bda11g01176 Bda-Chr11:12156585 4.34E-75 dispersed
Bda08g00266 Bda-Chr8:2739618 Bda12g00562 Bda-Chr12:9654647 3.11E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00562 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.8e-198 688.7
Bda05g00496 . 1 442 MRS2 Gene Family AT1G16010 76.7 4.1e-182 634.4
Bda11g01176 . 36 420 MRS2 Gene Family AT1G16010 57.0 1.9e-115 412.9
Bda08g00266 . 6 415 MRS2 Gene Family AT5G64560 71.0 3.5e-150 528.1
Bda06g01175 . 15 502 MRS2 Gene Family AT3G19640 61.8 6.1e-147 517.7
Bda06g01174 . 15 502 MRS2 Gene Family AT3G19640 62.1 7.5e-145 510.8
Bda06g01157 . 39 501 MRS2 Gene Family AT3G19640 64.5 7.5e-145 510.8
Bda06g01165 . 39 499 MRS2 Gene Family AT3G19640 64.6 1.1e-143 506.9
Bda11g01176 . 11 420 MRS2 Gene Family AT2G03620 64.3 7.5e-133 470.7
Bda12g00562 . 9 443 MRS2 Gene Family AT2G03620 52.5 8.0e-111 397.5
Bda05g00496 . 6 442 MRS2 Gene Family AT2G03620 50.3 1.7e-105 379.8
Bda08g00266 . 6 357 MRS2 Gene Family AT5G09690 68.0 1.2e-119 426.4
Bda12g00562 . 50 379 MRS2 Gene Family AT5G09690 51.7 3.2e-75 278.9
Bda08g00266 . 26 293 MRS2 Gene Family AT5G09720 67.6 1.1e-90 330.1
Bda12g00562 . 1 443 MRS2 Gene Family AT1G80900 82.4 7.7e-197 683.3
Bda05g00496 . 1 442 MRS2 Gene Family AT1G80900 75.8 1.5e-179 625.9
Bda11g01176 . 36 420 MRS2 Gene Family AT1G80900 56.6 7.4e-115 411.0
Bda09g00228 . 41 441 MRS2 Gene Family AT5G22830 70.7 5.1e-151 531.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00266 Bda_Chr08 FPKM 23.13624 23.453138 216.588455 221.804474 20.166351 17.030678 16.734413 61.705597 66.646355