Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00268 ATGCTCTCAGGAGTCAAGTTCATATCCCGCGACGAGCTTAATAATGCACCAGATGACACAGATGATGTCTTTAAAGACAAGAAATTGGGTGATAAAGATAAAAAGAAGAAGAAGAAGAAGCCTCCTTTTAGTTTTAGTAGTTCAGATGATGATCTTTACTTAAAAAAGGAGGGCAGAAAAAAGAAGAGGTGGTACTCATCAGATGAGAGCTCTCCATCTAGTTCAAGTGACGATGGCAAGAGGAGATATTCTGTACATAGAGGCAAAAAAGAGAAGAAAAGTAAGAGGAGTAAGAACAGTCGAAAGGGCATTGTAGGGGACCATACATCTGGTAGTGAAGAAACTCACTCCCAAAATGATAACGAAACCGTGAGAAAAGGGATGGGATTAGAGTGGATGATTACTCCCGAGGCACAGAAAGTAAGAAAGCCTTCTGAAACCATTTATAATGAGCAAGAGAAAGCTTCTGAAGATGAGCTAAAGAAGGCAAATCCAAAAGAATTGAATCCATATTTGAAGGATAATGGCAGCGGTTATCCAGAAGTAGAAATGGATAAAGCTGGTGGATATGAACATCCGTCTTCTTCTGTTGTTGGAGATGGAGGGGCTAGCTGGAGGCTTAAAGCTTTGAAGCGTGCACAAGAACAAGCTGCACGAGAAGGAAAAAAACTTGATGAGGTCGTTGGGGAACGATGGGGTTCTCTTGGTCAACTAGCTGTCTCTGTGGCATCCCGACGAGCTGCTCCATCTCGAGCCCATTTGCATGCCATAAAACATAGAAGGAGAGGACTGAATGATGAAGACCAATCCGATTCAGACTCACAAAGACAGAAAGATAAGAAATCTAGCAGGGATTACTTGAGGGATGTCTCTGCCAGGCATCCTGAAATGAGGGAGCCTAAGGTTTTGGATTCCTTGTCATGGGGAAAGAGAAAAGGTCAAAATGTTTCTTCTAAGGATGCTGCGTTTGTCTCTGCGGCAGTATCTGGCATAAATAAGTTTGAAAATGATGGAAACTTTATGCGTGCATTTATTGGTGGACAAAGTAATGAATCTCGTGATTCAGTTAAGGAAAATGAGGAGAAATCAGATACAGGCGGAGTTAGAAAAGCTAGTGCAGATAGCATTGTGGTTAGGAGTGAAATGAGTGCAAATCAGATGGCAGCTAAGGCTTTACAGCTTCAATTAAAAGGACAGCACGAAGAAGCCCAAAGGCTTCTGAAAGAATTGGAAGATTTGAAGTCAGCAACAGCTAACACAATTAGTCCCAGTAGACCTCGAGTTGAAGCTACCACAGCAAGATGTGTTTATCAGGATCCATCTAACAAGAAAAGGGAAGATGATAGTGACAAGTATCTAGCAGAAAGGATAATGCGTAACAAGCAATATAGCAGATCTGGTCAAGCAGACGATGAGTATGACTATGAAGCCGCTCCCAGCAGAAAGTCTCGGAAAAATAGAGGAGCTGATGACCAGAATGCCAACAAGATGAATACTCTCTCAAAACGTATTTTGACTCAAGCCGAGCGATGCAGTTTTTGCTTTGAGAATCAGAACCGGCCAAAACATCTCGTCGTGTCAATAGCAAACTTTACTTATTTGATGTTACCACAATGGCAGCCTATCGTTCCTGGTCATTGTTGTATTTTAACAATGCAGCATGAATCAGCTACTAGGACAGTTGACAAAAATGTATGGGAGGAAATTCGAAACTTCAAGAAGTGTTTGATAATGATGTTTGGGCGACAAGAAAAGGAACTCGTCTTTCTTGAGACGGTCATGGATTTGGCTAAGCAACGTCGCCATTGCTTGATTGAATGCATTCCAATACCTTCGGATGTCGCAAAAGAGGCTCCCTTGTATTTCAAAAAGGCCATTGATGAAGCAGAGGAAGAGTGGAGCCAACACAATGCAAAGAAGCTCATCGACACGAGTGTAAAAGGACTACGAGGATCGATTCCAGAGCATTTCCCCTACTTTCACGTAGAATTCGGATTGAACAAGGGCTTTGTGCATGTGATCGATGACGAGAAACAGTTTAAAAGCAGCTTCGGCCTAAATGTACTGAGAGGAATGCTTCGCTTGCCAGAGGAAGACATGCACCGTCGTCGTAAATACGAGTCTGTCGAGGTTCAGAGGGAAGCTGTCGCTAATTTCGCTCAGGATTGGAAGACTTTCGACTGGACAAAACAGCTGTGA 2199 42.7 MLSGVKFISRDELNNAPDDTDDVFKDKKLGDKDKKKKKKKPPFSFSSSDDDLYLKKEGRKKKRWYSSDESSPSSSSDDGKRRYSVHRGKKEKKSKRSKNSRKGIVGDHTSGSEETHSQNDNETVRKGMGLEWMITPEAQKVRKPSETIYNEQEKASEDELKKANPKELNPYLKDNGSGYPEVEMDKAGGYEHPSSSVVGDGGASWRLKALKRAQEQAAREGKKLDEVVGERWGSLGQLAVSVASRRAAPSRAHLHAIKHRRRGLNDEDQSDSDSQRQKDKKSSRDYLRDVSARHPEMREPKVLDSLSWGKRKGQNVSSKDAAFVSAAVSGINKFENDGNFMRAFIGGQSNESRDSVKENEEKSDTGGVRKASADSIVVRSEMSANQMAAKALQLQLKGQHEEAQRLLKELEDLKSATANTISPSRPRVEATTARCVYQDPSNKKREDDSDKYLAERIMRNKQYSRSGQADDEYDYEAAPSRKSRKNRGADDQNANKMNTLSKRILTQAERCSFCFENQNRPKHLVVSIANFTYLMLPQWQPIVPGHCCILTMQHESATRTVDKNVWEEIRNFKKCLIMMFGRQEKELVFLETVMDLAKQRRHCLIECIPIPSDVAKEAPLYFKKAIDEAEEEWSQHNAKKLIDTSVKGLRGSIPEHFPYFHVEFGLNKGFVHVIDDEKQFKSSFGLNVLRGMLRLPEEDMHRRRKYESVEVQREAVANFAQDWKTFDWTKQL 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2752298 2759911 + Bda024697.1 Bda08g00268 11124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00268 732 PANTHER CWF19-LIKE PROTEIN 2 35 732 - -
Bda08g00268 732 Coils Coil 210 230 - -
Bda08g00268 732 Pfam Protein similar to CwfJ C-terminus 1 501 623 IPR006768 -
Bda08g00268 732 Coils Coil 389 420 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 152 168 - -
Bda08g00268 732 Pfam Protein similar to CwfJ C-terminus 2 632 729 IPR006767 -
Bda08g00268 732 MobiDBLite consensus disorder prediction 100 121 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 85 99 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 439 458 - -
Bda08g00268 732 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 35 732 IPR040194 -
Bda08g00268 732 MobiDBLite consensus disorder prediction 1 129 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 465 491 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 42 67 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 242 312 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 152 201 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 260 306 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 353 368 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 12 30 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 417 496 - -
Bda08g00268 732 MobiDBLite consensus disorder prediction 349 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00268 K24940 CWF19L2; CWF19-like protein 2 - pop:18095883 831.247
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00268 Bda-Chr8:2752298 Bda09g01086 Bda-Chr9:41390989 4.72E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g627 Blo01g00097 . . Bda08g00268 . . . Bma05g01076 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0144 . . . . . . . . . . Bpe05g00866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006081 1 2 1 1 1 1 1 1 1 2 1 1 2 2 2 1 0 1 0 0 1 2 2 1 2 1 2 1 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00268 Bda_Chr08 FPKM 7.011698 8.290586 9.684381 9.17319 8.809018 9.09457 9.120779 13.905961 13.058294