Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00269 ATGAACGATCAAAACAGTAGAGAAGACGATGATGACGAGAGAGAAAACGGATCAGACGAGCCAAGAGAAGGAGCGGTCGAGATCGGAAATCGCAGACCGAGAGGCCGTCCACCCGGATCCAAAAACAAGCCGAAACCACCGATTTTCGTGACCCGAGACAGCCCAAACGCCCTCCGGAGCCACGTTATGGAGGTCGCCGGAGGAGCTGATGTGGCGGAGAGCGTAGCTCAGTTCGCTAGGCGTAGGCAGCGGGGTGTGTGCGTGCTGAGCGCTAGCGGCGCAGTCACGAACGTCACCATACGCCAGCCTGCAACACCTGGTGCTGTGGTGGCACTACATGGACGGTTCGAGATTTTGTCACTGACCGGAGCTTTTCTGCCAGGTCCAGCCCCACCCGGGTCCACGGGTATGACCGTTTATCTCGCCGGAGGGCAAGGGCAGGTCGTCGGAGGGAGTGTAGTTGGGTCGCTAGTTGCAGCTGGGCCAGTAATGGTGATTGCCGCTACTTTTTCCAATGCGACTTACGAGAGATTGCCTCTTGAAGACGATGACAGTAATGAAGGCGGAATCGGCAGTACAGGAGCTGGAACCTCCCCTCCGTCGATGGGAGGCAGCGGAGGGAATTTCCCGGCTGGTTTGCCGGATTCTTCTTCTGCACTTCCCGTCTACAATTTGACTCCAAATCTTATTTCCAATGGAGGTCAACTCGGACATGAAGCTGCTTATGCTACTTGGGGCGGCCATGGGAGGCCAAACTACTGA 762 56.56 MNDQNSREDDDDERENGSDEPREGAVEIGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGADVAESVAQFARRRQRGVCVLSASGAVTNVTIRQPATPGAVVALHGRFEILSLTGAFLPGPAPPGSTGMTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFSNATYERLPLEDDDSNEGGIGSTGAGTSPPSMGGSGGNFPAGLPDSSSALPVYNLTPNLISNGGQLGHEAAYATWGGHGRPNY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2778593 2779354 - Bda024699.1 Bda08g00269 11125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00269 253 PIRSF ESCAROLA 1 253 IPR014476 GO:0003680
Bda08g00269 253 ProSiteProfiles PPC domain profile profile. 55 193 IPR005175 -
Bda08g00269 253 SUPERFAMILY AF0104/ALDC/Ptd012-like 55 185 - -
Bda08g00269 253 PANTHER DNA-BINDING PROTEIN-LIKE 7 253 - -
Bda08g00269 253 MobiDBLite consensus disorder prediction 190 204 - -
Bda08g00269 253 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 253 IPR014476 GO:0003680
Bda08g00269 253 MobiDBLite consensus disorder prediction 179 213 - -
Bda08g00269 253 Pfam Plants and Prokaryotes Conserved (PCC) domain 59 172 IPR005175 -
Bda08g00269 253 CDD DUF296 59 142 IPR005175 -
Bda08g00269 253 MobiDBLite consensus disorder prediction 1 17 - -
Bda08g00269 253 Gene3D - 58 187 - -
Bda08g00269 253 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00269 Bda-Chr8:2778593 Bda15g00342 Bda-Chr15:6271137 2.85E-85 dispersed
Bda11g00619 Bda-Chr11:6253207 Bda08g00269 Bda-Chr8:2778593 2.12E-07 wgd
Bda13g00078 Bda-Chr13:999355 Bda08g00269 Bda-Chr8:2778593 2.28E-74 wgd
Bda03g00846 Bda-Chr3:7311081 Bda08g00269 Bda-Chr8:2778593 8.70E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00269 - - mesc:110601522 329.717