Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00273 | CTTCAAATGGATACATCACTCTTCCACTCCAGGAATTCTGATTTTTTACCGGAATCTTACTTGGGGTCGCCGGAATACTTTTCTTCCGGCGCCACCACCTTTTTCCCTTTCAACGAAAACGACTCAGAAGAGATGCTTCTCTACAGCCTCATTTCTCCGCGGAAAAACATATTTCCCGAACAAATTCGAGAAGAAACGGATTCATTTTCCAAACCAAGTCCAGAAAAGTCATACAGAGGTGTGAGAAAGAGGCCATGGGGAAAATTCGCAGCAGAAATAAGGGACTCGACCAGAAATGGAGTTAGAGTTTGGCTGGGGACGTTCGACAGTGCAGAAGCGGCGGCCATGGCTTACGACCAAGCGGCTTTTTCAATGAGAGGAACGGCAGCGATTCTAAATTTCCCGGCGGAGAGAGTACAGGAATCGCTTAGAAAGATGAACTGCGGCGCCGGGGATGGGTCTCCGGTTATTGCTTTGAAACAGGAGCACTGTTTGAGAAGAAGATCGACGAAGAAAAGGTTGAAAGAGAGAGACTGGGGTGATTTTTGA | 549 | 47.36 | LQMDTSLFHSRNSDFLPESYLGSPEYFSSGATTFFPFNENDSEEMLLYSLISPRKNIFPEQIREETDSFSKPSPEKSYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAAMAYDQAAFSMRGTAAILNFPAERVQESLRKMNCGAGDGSPVIALKQEHCLRRRSTKKRLKERDWGDF | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2834233 | 2834781 | + | Bda024705.1 | Bda08g00273 | 11129 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00273 | 182 | Gene3D | AP2/ERF domain | 76 | 136 | IPR036955 | GO:0003700|GO:0006355 | |
Bda08g00273 | 182 | PRINTS | Ethylene responsive element binding protein signature | 101 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00273 | 182 | PRINTS | Ethylene responsive element binding protein signature | 78 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00273 | 182 | PANTHER | DNA-BINDING DOMAIN | 30 | 176 | IPR044808 | GO:0003700|GO:0009873 | |
Bda08g00273 | 182 | SUPERFAMILY | DNA-binding domain | 77 | 136 | IPR016177 | GO:0003677 | |
Bda08g00273 | 182 | SMART | rav1_2 | 77 | 141 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00273 | 182 | CDD | AP2 | 76 | 136 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00273 | 182 | Pfam | AP2 domain | 77 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00273 | 182 | ProSiteProfiles | AP2/ERF domain profile. | 77 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00273 | 182 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 30 | 176 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g01182 | Bda-Chr7:14229198 | Bda08g00273 | Bda-Chr8:2834233 | 2.94E-50 | dispersed | |
Bda08g00273 | Bda-Chr8:2834233 | Bda13g00069 | Bda-Chr13:938904 | 6.70E-59 | dispersed | |
Bda08g00272 | Bda-Chr8:2826716 | Bda08g00273 | Bda-Chr8:2834233 | 1.00E-28 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16246 | PF00847 | AP2 | 2.00E-14 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00273 | K14516 | - | csin:114283936 | 210.305 |