Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00273 CTTCAAATGGATACATCACTCTTCCACTCCAGGAATTCTGATTTTTTACCGGAATCTTACTTGGGGTCGCCGGAATACTTTTCTTCCGGCGCCACCACCTTTTTCCCTTTCAACGAAAACGACTCAGAAGAGATGCTTCTCTACAGCCTCATTTCTCCGCGGAAAAACATATTTCCCGAACAAATTCGAGAAGAAACGGATTCATTTTCCAAACCAAGTCCAGAAAAGTCATACAGAGGTGTGAGAAAGAGGCCATGGGGAAAATTCGCAGCAGAAATAAGGGACTCGACCAGAAATGGAGTTAGAGTTTGGCTGGGGACGTTCGACAGTGCAGAAGCGGCGGCCATGGCTTACGACCAAGCGGCTTTTTCAATGAGAGGAACGGCAGCGATTCTAAATTTCCCGGCGGAGAGAGTACAGGAATCGCTTAGAAAGATGAACTGCGGCGCCGGGGATGGGTCTCCGGTTATTGCTTTGAAACAGGAGCACTGTTTGAGAAGAAGATCGACGAAGAAAAGGTTGAAAGAGAGAGACTGGGGTGATTTTTGA 549 47.36 LQMDTSLFHSRNSDFLPESYLGSPEYFSSGATTFFPFNENDSEEMLLYSLISPRKNIFPEQIREETDSFSKPSPEKSYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAAMAYDQAAFSMRGTAAILNFPAERVQESLRKMNCGAGDGSPVIALKQEHCLRRRSTKKRLKERDWGDF 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2834233 2834781 + Bda024705.1 Bda08g00273 11129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00273 182 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Bda08g00273 182 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Bda08g00273 182 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Bda08g00273 182 PANTHER DNA-BINDING DOMAIN 30 176 IPR044808 GO:0003700|GO:0009873
Bda08g00273 182 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Bda08g00273 182 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Bda08g00273 182 CDD AP2 76 136 IPR001471 GO:0003700|GO:0006355
Bda08g00273 182 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Bda08g00273 182 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Bda08g00273 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 30 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01182 Bda-Chr7:14229198 Bda08g00273 Bda-Chr8:2834233 2.94E-50 dispersed
Bda08g00273 Bda-Chr8:2834233 Bda13g00069 Bda-Chr13:938904 6.70E-59 dispersed
Bda08g00272 Bda-Chr8:2826716 Bda08g00273 Bda-Chr8:2834233 1.00E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16246 PF00847 AP2 2.00E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00273 K14516 - csin:114283936 210.305