Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00277 CGGACGGCTTTGATGGCCGTCGAAGCAGGCGGGACAATAATGGAAATGGGGTACGAATTGAGCTCCGATCACCATTCCGTGGTTTCGATGAACCTATTCGTTACTCTTCTTTGCGCCTGCATTGTTATCGGCCATTTTCTTGAGGAAAATCGTTGGTTTAATGAGTCTATTACGGCTCTCATTATTGGTTTATTCACTGGGGTGGTTATATTGCTTACGACCGGAGGAAAAAGCTCACGTTTGTTAGTGTTCAGTGAAGATCTCTTCTTCATCTATCTTCTTCCCCCCATAATATTCAATGCTGGGTTCCAGGTGAAGAAGAAGCAATTTTTCCGCAACTTTATGACTATCATGCTCTTTGGAGCATTTGGCACTCTCATATCCTTTGGAATTATATCATCAGGTGCCTTCCATTTTTTTCGTAAAATAGGAATTAGTTCGCTTGAGATTACCGATTACCTAGCAGTTGGCGCCATATTTTCTGCAACCGATTCTGTTTGCACTCTGCAGGTTCTTGATCAGGATGAGACTCCCTTTTTGTACAGTTTGGTTTTTGGGGAAGGTGTTGTTAATGATGCTACATCTGTGGTGCTATTCAACGCGATTCAGAAGTTTGATCTCACTCACATCAATTCAAGCATAGTTTTGCAATTCATTGCCAACTTCTTGTATTTATTTATTGCAAGCACTTTGTTGGGTTTCTTGGCTGGTCTGATTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGACATTCTACGGATCGTGAGGTGGCACTGATGATACTCATAGCATATCTCTCATATGTCCTGGCCGAGCTCTTTAACTTGAGCGCGATTCTTACAGTATTCTTTTGCGGTATTGTTATGTCACATTACACCTGGCATAATGTGACTGAAAGTTCAAGGGTGACCAGTAAGCATGCGTTTGCTACTCTGTCGTTGGTAGCCGAGATTTTTATCTTCCTTTACGTTGGCATGGATGCCTTGGACATTGAAAAGTGGAGATATGTAAGCCATAGTCCTAGGAGATCCATTGGAGTGAGTTCTATATTGTTGGGACTTGTTCTGGTTGGAAGGGCAGCTTTTGTTTTTCCTCTTTCCCTCCTGTCCAATTTGACCAAGAGGTCGTCATATGAGAAGATTAATTTAAAGCAACAATTCACGATTTGGTGGGCCGGTCTTATGCGTGGTGCAGTTTCTATGGCACTTTCATATAATCAGTTTAGCAGGTCAGGTTATACCCAATTATATGGGAATGCATTCATGATTACTAGCACTATAACAGTTGTTCTTTTCAGCACCATGGTGTTTGGATTGATGACAAAAGCTTTGGTTAGAATTCTGCTGCCTCCTTCAAAACAAACAAGCAGTGTGCTTTCTGAACCATCTACTCCTAAATCCTTCACTCTCCCACTTCTTTGCAATGGGAACGGCTCGGGAAGTGGTGATAATTGCAGCCAAACTTGGAGCTTGTGGATGATTTTTAGCATTCCTACTCGATCGGTACACCATTATTGGCGGAGTTTTGACGATGCTTTTATGCGTCCGGTTTTCGGAGGGAGAGGTTTCGTGCCGTTTATTCCTGGCTCGGCAACTGATGAAGGCGGTACAGATTGA 1620 42.59 RTALMAVEAGGTIMEMGYELSSDHHSVVSMNLFVTLLCACIVIGHFLEENRWFNESITALIIGLFTGVVILLTTGGKSSRLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAFGTLISFGIISSGAFHFFRKIGISSLEITDYLAVGAIFSATDSVCTLQVLDQDETPFLYSLVFGEGVVNDATSVVLFNAIQKFDLTHINSSIVLQFIANFLYLFIASTLLGFLAGLISAYIIKKLYFGRHSTDREVALMILIAYLSYVLAELFNLSAILTVFFCGIVMSHYTWHNVTESSRVTSKHAFATLSLVAEIFIFLYVGMDALDIEKWRYVSHSPRRSIGVSSILLGLVLVGRAAFVFPLSLLSNLTKRSSYEKINLKQQFTIWWAGLMRGAVSMALSYNQFSRSGYTQLYGNAFMITSTITVVLFSTMVFGLMTKALVRILLPPSKQTSSVLSEPSTPKSFTLPLLCNGNGSGSGDNCSQTWSLWMIFSIPTRSVHHYWRSFDDAFMRPVFGGRGFVPFIPGSATDEGGTD 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2892266 2895776 + Bda024709.1 Bda08g00277 11133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00277 539 Pfam Sodium/hydrogen exchanger family 35 447 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bda08g00277 539 Gene3D - 149 201 - -
Bda08g00277 539 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bda08g00277 539 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bda08g00277 539 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bda08g00277 539 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bda08g00277 539 PANTHER SODIUM/HYDROGEN EXCHANGER 3 14 535 - -
Bda08g00277 539 PANTHER SODIUM/HYDROGEN EXCHANGER 14 535 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01709 Bda-Chr1:53095137 Bda08g00277 Bda-Chr8:2892266 0 dispersed
Bda02g00068 Bda-Chr2:2793175 Bda08g00277 Bda-Chr8:2892266 1.99E-32 dispersed
Bda04g00588 Bda-Chr4:54568388 Bda08g00277 Bda-Chr8:2892266 0 dispersed
Bda07g00386 Bda-Chr7:4847301 Bda08g00277 Bda-Chr8:2892266 0 dispersed
Bda08g00277 Bda-Chr8:2892266 Bda07g01728 Bda-Chr7:32341780 6.96E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00277 - - cpap:110819963 808.905