Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00279 ATGTCTCTGAAGAGTATAATTCAGGACATGAGGTCTCGATCGCATCGGGTGGTCCAGGATGGCTTACCTCCCGCGGTGAAAGATGGTTTGGAGCAGAGCTGTTGGGCTTACATGCCTCAGGAGCTACTGCGGGAGGTTCTTATGCGAATTGAGGCATCTGAGGGTGCTTGGCCGCCGAGGAAGAGCGTTGTTGCTTGTGCTGGAGTGTGCCGGAGTTGGAGAGTTATTACTAAGGAGATCGTCAAAACTCCTGAAACCTCCGGAAAGTTGACCTTTCCGATCTCTATCAAGCAGCCTGGTTCAAGGGAGTCTCTTCTCCAGTGCTTCATAAGACGAAACAGATCCACAAAAACTTATTACCTTTTTCTCAGTTTGACTAGTGCCCTCAATGATGATGGGAAGTTCCTTCTTGCTGCACGAAAATGTAGACGACCTACATGTACAGATTATATCATCTCTATTCGGGCTGATGATATGTCAAAAGGAAGCAGCACCTATGTCGGTAAATTAACGTATGTGCTTAAAAGGTCCAACTTTCTCGGAACTAAGTTTACAATATTTGATGGACAGCCGCCCCATGCAAGTGCCAAGATCACAAAAAGTCGCTCAACCAGGCTTGTAAATTTGAAACAAGTTTCACCCAGAATTCCTGTAGGAAACTTCCCAGTTGCTCGCATCTCATATGAATTGAACGTCCTGGGTTCAAGGCAAGTAGGTCCAAGGAGAATGCATTGCATCATGGACGCCATTCCTTCCTCCTCAATTGAACCAGGCGGAGTGGCACCCACACAAACTGAGGCTTCACTTAGCCATGTTGAATTTTCCCCATCATTCCGATTTTTCCGGTCAAAGTCAATCAACTTGGATAACTCTGTCTCTGGACCTTTGGCCTGTCAGAAAGATGGAATGCTGGTTCTGAGAAACAAGAGTCCCAGGTGGCATGAGCAACTACAATGCTGGTGTTTGAACTTCCATGGGCGAGTGACCATTGCTTCGGTGAAAAATTTTCAGTTAGTTGCTTCTCCAGAAAACGGACCTGCAGGACCAGAACATGAGAAAATAATCCTCCAATTTGGAAAAGTAGGAAAGGATTTATTTACAATGGATTATCGGTACCCAGTCTCAGCATTCCAGGCATTTGCAATCTGTCTTAGCAGCTTTGACACCAAGATCGCTTGTGAATGA 1185 45.82 MSLKSIIQDMRSRSHRVVQDGLPPAVKDGLEQSCWAYMPQELLREVLMRIEASEGAWPPRKSVVACAGVCRSWRVITKEIVKTPETSGKLTFPISIKQPGSRESLLQCFIRRNRSTKTYYLFLSLTSALNDDGKFLLAARKCRRPTCTDYIISIRADDMSKGSSTYVGKLTYVLKRSNFLGTKFTIFDGQPPHASAKITKSRSTRLVNLKQVSPRIPVGNFPVARISYELNVLGSRQVGPRRMHCIMDAIPSSSIEPGGVAPTQTEASLSHVEFSPSFRFFRSKSINLDNSVSGPLACQKDGMLVLRNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDLFTMDYRYPVSAFQAFAICLSSFDTKIACE 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2908572 2911354 + Bda024712.1 Bda08g00279 11135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00279 394 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 394 - -
Bda08g00279 394 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Bda08g00279 394 Pfam F-box domain 38 82 IPR001810 GO:0005515
Bda08g00279 394 PANTHER TUBBY-RELATED 1 394 - -
Bda08g00279 394 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Bda08g00279 394 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Bda08g00279 394 PRINTS Tubby superfamily signature 372 394 IPR000007 -
Bda08g00279 394 PRINTS Tubby superfamily signature 324 340 IPR000007 -
Bda08g00279 394 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Bda08g00279 394 PRINTS Tubby superfamily signature 306 323 IPR000007 -
Bda08g00279 394 PRINTS Tubby superfamily signature 351 370 IPR000007 -
Bda08g00279 394 ProSitePatterns Tub family signature 1. 324 337 IPR018066 -
Bda08g00279 394 ProSitePatterns Tub family signature 2. 379 394 IPR018066 -
Bda08g00279 394 SUPERFAMILY Tubby C-terminal domain-like 84 394 IPR025659 -
Bda08g00279 394 Pfam Tub family 97 389 IPR000007 -
Bda08g00279 394 Gene3D Tubby Protein; Chain A 93 394 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00279 Bda-Chr8:2908572 Bda11g01863 Bda-Chr11:53727722 4.51E-146 dispersed
Bda12g00817 Bda-Chr12:37582162 Bda08g00279 Bda-Chr8:2908572 4.39E-42 transposed
Bda03g01209 Bda-Chr3:14897856 Bda08g00279 Bda-Chr8:2908572 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16247 PF01167 Tub 1.80E-102 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00279 K19600 - zju:107426905 643.269