Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00280 GAGTCCTACCCTGAGCGGCCGCTCGAGGCTGATTGTATCTACTATTTGCGAACCGGCTTTTGCGGCTATGGTTCCCGTTGCCGATTTAATCATCCTCGTGGACATAGCGCGGTTGGGGGATCTGCAAGGCCTGGTGGAGTAGAGTACCCAGAGAGATTAGGGCAACCTCTATGCCAGTATTTTATGAAAACTGGAATGTGTAAATTTGGTGCTACTTGCAAGTATCACCATCCAAAACAGGGAGGTGGTCCTGCCATTCCTGCTACATTGAATTATTACGGATACCCATTACGGCCGGGTGAAAAAGAGTGTTCTTATTACATCAAAACTGGCCAATGTAAATTTGGCGGGACATGTAAATTCCATCATCCGCAGCCAGTTAGTGTTCATCTTCCAACGCAATCCCAGGCTCCGAGCATTACCCATGTTCCCTCACCCAATGTGTATCCTTCTGTACAATCTCCATCTCTTCCTTCATCTCAACATTATGGGGTAGTAGTTGCAAGGCCATCTTTGCTGCCAAGTTCATACATTCATAGTGCTTATGGTCCTTTGCTTCTCCCCCAGGGGATGGTTCCTTTTCCAAGTTGGGGTCCTTATCTGACTCCACTAAACCCAGTAGCGTCTCCTAGCACTCAACCTTCTGTTGGTTCGGGATCACTTTATGGAATAACACAGCTTTCTCCTTCTGCCCCTGCATATATTGGATCATATCACACCATGCCATCTGTTGGACCCTCAAGCAGTAGCCAAAGAGAAGTGTTTCCAGAGAGACCAGGCCAACCAGAATGTCAGCATTACATGAGAACAGGGGATTGCAAATTTGGATCGTCATGTAAATATCATCACCCTCCAGAATTGATTGCTCCAAGAGCAAATGTTGTCCTTGGCCCAATGGGTCTTCCTCTTCGGGGCTCCCCTCAATGTACCCACTTTGCACAACATGGCGTATGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCATCAGGAACCCTTAGTTACAGCCCCTCTGCATCCTCTCTCGTGGATATGCCTGTCGCGCCTTACCCAGTGGGGTCCACGATCGGTACTTTAGCTCCATCTTCATCGTCCTCAGATTTACGGCCTGAAATTGTTTCAGGATCAAGTAAGGATTCTAATTCAGCTAGAGGTTCTTCATCATTGAGTATATCTTCAGGGTCAACTGGTTCAATCATGTCAAGAAGTGGACCATTTTCTCAGTCTAGTGTCAAACCGTCTTCCCAGAGTTCAGGCCCCTTCACTAGCTCTGTGTAG 1278 47.5 ESYPERPLEADCIYYLRTGFCGYGSRCRFNHPRGHSAVGGSARPGGVEYPERLGQPLCQYFMKTGMCKFGATCKYHHPKQGGGPAIPATLNYYGYPLRPGEKECSYYIKTGQCKFGGTCKFHHPQPVSVHLPTQSQAPSITHVPSPNVYPSVQSPSLPSSQHYGVVVARPSLLPSSYIHSAYGPLLLPQGMVPFPSWGPYLTPLNPVASPSTQPSVGSGSLYGITQLSPSAPAYIGSYHTMPSVGPSSSSQREVFPERPGQPECQHYMRTGDCKFGSSCKYHHPPELIAPRANVVLGPMGLPLRGSPQCTHFAQHGVCKFGPACKFDHSSGTLSYSPSASSLVDMPVAPYPVGSTIGTLAPSSSSSDLRPEIVSGSSKDSNSARGSSSLSISSGSTGSIMSRSGPFSQSSVKPSSQSSGPFTSSV 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2916395 2920496 + Bda024713.1 Bda08g00280 11136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00280 425 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Bda08g00280 425 SUPERFAMILY CCCH zinc finger 262 286 IPR036855 GO:0046872
Bda08g00280 425 Gene3D - 85 134 - -
Bda08g00280 425 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Bda08g00280 425 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Bda08g00280 425 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Bda08g00280 425 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Bda08g00280 425 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Bda08g00280 425 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Bda08g00280 425 SMART c3hfinal6 6 33 IPR000571 GO:0046872
Bda08g00280 425 SUPERFAMILY CCCH zinc finger 11 34 IPR036855 GO:0046872
Bda08g00280 425 SUPERFAMILY CCCH zinc finger 100 125 IPR036855 GO:0046872
Bda08g00280 425 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 1 417 - -
Bda08g00280 425 PANTHER PROTEIN PHOSPHATASE RELATED 1 417 - -
Bda08g00280 425 SUPERFAMILY CCCH zinc finger 306 333 IPR036855 GO:0046872
Bda08g00280 425 MobiDBLite consensus disorder prediction 359 425 - -
Bda08g00280 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Bda08g00280 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 285 IPR000571 GO:0046872
Bda08g00280 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Bda08g00280 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 10 33 IPR000571 GO:0046872
Bda08g00280 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 329 IPR000571 GO:0046872
Bda08g00280 425 SUPERFAMILY CCCH zinc finger 53 79 IPR036855 GO:0046872
Bda08g00280 425 Gene3D - 5 82 - -
Bda08g00280 425 Gene3D - 257 340 - -
Bda08g00280 425 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Bda08g00280 425 ProSiteProfiles Zinc finger C3H1-type profile. 6 34 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00331 Bda-Chr5:46888113 Bda08g00280 Bda-Chr8:2916395 4.45E-15 dispersed
Bda08g00280 Bda-Chr8:2916395 Bda12g00306 Bda-Chr12:3373031 4.89E-99 dispersed
Bda08g01160 Bda-Chr8:45327131 Bda08g00280 Bda-Chr8:2916395 1.32E-06 dispersed
Bda08g00280 Bda-Chr8:2916395 Bda12g00047 Bda-Chr12:290653 3.31E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16248 PF00642 zf-CCCH 9.00E-10 CL0537 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00280 - - vvi:100257896 627.476