Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00283 GCTGCATCGATCATGGAAGACTCATCCCAAGAGCGTCTTCATTTCGGAAAGATGGGATACGGATGCAAGCACTACAGAAGGAGATGTAGAATTCGAGCTCCATGCTGCAACGAGATCTACGATTGCCGCCATTGCCATAACGAGGCCACGAGCTTATTTAACAATCCATTTGATCGCCATGAACTCGTTCGCTTTGACGTCAAACAAGTTGTTTGTTCAGTCTGTGACACAGAGCAACCAGTTGCTCAAGTTTGTACGAACTGTGGTGTGAATATGGGGGAATACTTCTGCAAAATTTGCAAATTCTATGATGATGCTGAGAAAAAACACTTCCACTGTGACGATTGTGGGATATGCAGAGTTGGTGGTCGTGAAAATTTCTTTCACTGCAAGAAGTGTGGGTCTTGCTACTCGCTTGGTCTGCGCGATAATCATTCGTGCGTAGAGAACTCAATGCGTCATCACTGCCCAATTTGCTACGAGTATCTATTTGACTCTCTCAAGGACACCACTGTAATGAAATGCGGACACACAATGCATTATGAATGTTACTATGAAATGTTAAAGCGCGATAAATGTTTTTGTCCGATATGTTCCAAGTCAATCATCGATATGTCTAGAACCTGGAAAAGAATAGATGAGGAGATTGAAGCTACTGTCATGCCGGAAGAGTACCGTGACAAGAAGGTTTGGATTTTGTGCAATGACTGCAATGACGATGAGAGAACCATTATGTCCATTAAACGATTTCCGAGTATAATACGGGGGAATTTTCGAAAGAGAGTATTTCTCACCATTACAATTTTTCAGAATGCTGGTACGCCGATATCAAGAGTTGTTTACTTTCTTCTTTGTCAGCCTCGAATGTTTACCATGGATTCCAATCGGTTTAAAAAGATTTTGGAGGAAGTACAGAATCCATCAAAATCTACCTTCGTTCTTGCTGCCCATTGCATGAATGCGATGAGCAAATCCACATGGGAAAGAAAGATCAAGATTTATAAGCGTTGGGGTTGGTCGGATGAAGATGTCCGTGCTGCATTTAGATGTCATCCATGGTGTATGACACTTTCTGAGGATAAAATCATGGCCTGCATGGGTTTCTTTGTTTATGAATTGGGTTGGGAGTCTTCACTTATGGCTAAAAGGCCTCTTCTTATTTCATTGAGCTTGAACAAGAGGATTATTCCAAGGGCTTCCGTTATGCAAATATTGTTTCAGAAAGGTTTGGTTAAGAATTTGACTTCAATAACCCCATATTTATGTTCCGAAAACTTGTTCTTAGACAAGTTTGTTCATCTTCATCCAGAAGAAGCTCCTCACCTCCTCGAGATTTATAATGAAAAATTGAATCTCGGAACTCAAAAAGTGTAA 1374 40.98 AASIMEDSSQERLHFGKMGYGCKHYRRRCRIRAPCCNEIYDCRHCHNEATSLFNNPFDRHELVRFDVKQVVCSVCDTEQPVAQVCTNCGVNMGEYFCKICKFYDDAEKKHFHCDDCGICRVGGRENFFHCKKCGSCYSLGLRDNHSCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHYECYYEMLKRDKCFCPICSKSIIDMSRTWKRIDEEIEATVMPEEYRDKKVWILCNDCNDDERTIMSIKRFPSIIRGNFRKRVFLTITIFQNAGTPISRVVYFLLCQPRMFTMDSNRFKKILEEVQNPSKSTFVLAAHCMNAMSKSTWERKIKIYKRWGWSDEDVRAAFRCHPWCMTLSEDKIMACMGFFVYELGWESSLMAKRPLLISLSLNKRIIPRASVMQILFQKGLVKNLTSITPYLCSENLFLDKFVHLHPEEAPHLLEIYNEKLNLGTQKV 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2941588 2947318 + Bda024716.1 Bda08g00283 11139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00283 457 ProSiteProfiles Zinc finger CHY-type profile. 15 90 IPR008913 GO:0008270
Bda08g00283 457 Gene3D Transcription termination factor 3, mitochondrial 231 442 IPR038538 -
Bda08g00283 457 SUPERFAMILY RING/U-box 155 205 - -
Bda08g00283 457 ProSiteProfiles Zinc finger RING-type profile. 156 199 IPR001841 -
Bda08g00283 457 Pfam Zinc-ribbon 203 242 IPR039512 -
Bda08g00283 457 SMART ring_2 156 198 IPR001841 -
Bda08g00283 457 SMART mt_12 345 376 IPR003690 GO:0003690|GO:0006355
Bda08g00283 457 SMART mt_12 377 411 IPR003690 GO:0003690|GO:0006355
Bda08g00283 457 PANTHER BNAC09G39170D PROTEIN 5 242 - -
Bda08g00283 457 Pfam CHY zinc finger 22 102 IPR008913 GO:0008270
Bda08g00283 457 Pfam Ring finger domain 155 198 IPR001841 -
Bda08g00283 457 SUPERFAMILY Zinc hairpin stack 93 149 IPR037275 -
Bda08g00283 457 Pfam mTERF 316 426 IPR003690 GO:0003690|GO:0006355
Bda08g00283 457 ProSiteProfiles Zinc finger CTCHY-type profile. 92 155 IPR017921 -
Bda08g00283 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 219 IPR013083 -
Bda08g00283 457 SUPERFAMILY CHY zinc finger-like 19 91 IPR037274 GO:0008270
Bda08g00283 457 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 5 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00283 K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] - zju:107426930 466.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00283 Bda13g00173 CCT
Bda08g00283 Bda11g00534 CCT
Bda08g00283 Bda13g00173 ECH
Bda08g00283 Bda11g00534 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00283 Bda-Chr8:2941588 Bda13g00177 Bda-Chr13:2236348 1.21E-60 dispersed
Bda01g00720 Bda-Chr1:34480854 Bda08g00283 Bda-Chr8:2941588 2.60E-97 transposed
Bda02g00731 Bda-Chr2:48137037 Bda08g00283 Bda-Chr8:2941588 2.29E-92 transposed
Bda06g00810 Bda-Chr6:11326123 Bda08g00283 Bda-Chr8:2941588 3.93E-25 transposed
Bda13g00166 Bda-Chr13:2132522 Bda08g00283 Bda-Chr8:2941588 2.06E-131 transposed
Bda15g00514 Bda-Chr15:8211756 Bda08g00283 Bda-Chr8:2941588 2.39E-33 transposed
Bda11g00534 Bda-Chr11:5612669 Bda08g00283 Bda-Chr8:2941588 3.16E-64 wgd
Bda13g00172 Bda-Chr13:2208090 Bda08g00283 Bda-Chr8:2941588 3.05E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g337 . . . Bda08g00283 . Bpe14g01137 . Bma05g01055 Cmo08g01188 . Cma06g01484 Cma14g01633 . . . . . . . . . . . . Cla06g00494 Cam06g0531 Cec06g0531 Cco06g0535 Clacu06g0515 Cmu06g0517 Cre06g1288 Cone11ag0062 Cone18ag1417 . . Lsi05g01523 . . Cme06g00711 Blo02g00516 Blo07g00180 Bda11g00534 Bda13g00173 Bpe05g00845 Bpe13g00655 . Bma06g01511 Sed02g1207 . Cmo14g01671 Cma08g01215 . Car08g01086 . . . Bhi12g02086 Tan06g0862 Cmetu06g1898 . . . Lcy13g0191 Cla05g00633 Cam05g0694 Cec05g0705 Cco05g0701 Clacu05g0689 Cmu05g0656 Cre05g0727 Lsi09g01413 Csa03g01436 Chy06g00675 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001789 2 2 0 2 2 2 4 2 1 2 2 2 4 2 2 4 2 4 4 1 2 2 1 2 2 1 2 3 5 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16250 PF02536 mTERF 5.80E-11 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00283 Bda_Chr08 FPKM 9.190852 8.536113 12.854021 12.738274 11.104958 11.026257 12.482191 12.368342 11.41432