Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00284 ATGTTTGCTTCGAGAATGGATTCTGCCCGGGAATCTGGTAGGGTCGCCAGCACTCTATTAATGCCTATGCGATTTGTATGGCCATATGGGGGAAGAAATGTATTTCTCAGTGGTTCTTTCACAAGGTGGTCAGAGCTTGTACCAATGACAGCTGTCGAGGGTTGCCCTACGGTGTTTCAAGCTATTTGCAGCATATCGCCTGGATATCACCAGTACAAATTTTTTATTGACGGAGAATGGAGACACGATGAGCACCAACCTCACGTGTCTGGTGAATATGGGATTGTGAACACTCTTCTCTTAGCCACAGAGCCCAATTTCATTCCTACAATATCAAATTCAGAAATGCCTCCTGGTTCTAGCATGGATGTGGACAATGAGGCTTTCCGACGTTTGGTTCGGATAACGGATGGGACCATGACGGAGGCATTACAGAGGATTTCGGAGGCAGACGTACAAAGCTCACGACATCGCATATCTGTATTCTTGTCTACAAATACTGTTTATGAGTTGCTTCCTGAATCAGGAAAGGTTGTTGCCTTGGATGTTGATTTACCTGTAAAGCAAGCGTTCCATGTCTTACATGAGCAGGGAATCTCTGTGGCTCCTCTTTGGGACTTCAGCAGGGGACAGTTTGTTGGAGTTCTTAGTGCATTGGATTTCATTTTAATTCTAAAAGAGCTTGGAAAGCGTGGCTCAAATCTGACAGAAGAAGAGCTTGAAACTCATACCATATCTGCTTGGAAAGAGGGAAAAGCATATCTGAATGGCCAAATTGATGGAACTGGGAGACTGTTTTCACGCCATCTCGTTCATGCTGGGCCATATGATAATCTGAAAGATGTTGCATTGAAGATATTGCAGAATGAGGTGGCCACAGTTCCCATCCTACATTCATCTTCAGAAGATGGTTCATTTCCGCAGCTATTACATATTGCCTCACTTTGTGGAATACTAAGATGTATTTGCAGGTATTTTAGGCACTGTTCCACTTTACTAACCATACTCCAAGTTCCTATTTGTGCACTTCCCATTGGTACTTGGGTTCCAAAAATTGGCGAATCAGATCGAAGACCATTAGCGATGTTAAGACCTAATGCTTCTCTTATTTCCGCTTTAAACTTGTTAGTCCAAGCTCAAGTTAGTTCGATACCCATAGTTGATGATAATGACTCGTTGCTTGATATATATTGTCGGAGTGATATAACGGCTTTAGCTAAAGACAGAGCCTACACTCATATAAATCTCGACGAAATGACTATTGATCAGGCCTTGCAACTGGGGCAAGATTCATGTTCTTATGAACAAAGAAATCAAAGATGTCACATGTGTTTGCGATCTGATTCGTTGCATAAAGTTATGGAACGTTTGGCCGATACGGGTGTTAGACGGCTCATTATTGTGGAAGCCGGGAGTAAGAGAGTGGAGGGCATCGTTTCGCTGACCGACATTTTCAAGTTCTTGCTCAAATAG 1473 43.04 MFASRMDSARESGRVASTLLMPMRFVWPYGGRNVFLSGSFTRWSELVPMTAVEGCPTVFQAICSISPGYHQYKFFIDGEWRHDEHQPHVSGEYGIVNTLLLATEPNFIPTISNSEMPPGSSMDVDNEAFRRLVRITDGTMTEALQRISEADVQSSRHRISVFLSTNTVYELLPESGKVVALDVDLPVKQAFHVLHEQGISVAPLWDFSRGQFVGVLSALDFILILKELGKRGSNLTEEELETHTISAWKEGKAYLNGQIDGTGRLFSRHLVHAGPYDNLKDVALKILQNEVATVPILHSSSEDGSFPQLLHIASLCGILRCICRYFRHCSTLLTILQVPICALPIGTWVPKIGESDRRPLAMLRPNASLISALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTIDQALQLGQDSCSYEQRNQRCHMCLRSDSLHKVMERLADTGVRRLIIVEAGSKRVEGIVSLTDIFKFLLK 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2949382 2956083 - Bda024717.1 Bda08g00284 11140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00284 490 CDD E_set_AMPKbeta_like_N 22 100 - -
Bda08g00284 490 Gene3D - 147 333 IPR046342 -
Bda08g00284 490 ProSiteProfiles CBS domain profile. 356 412 IPR000644 -
Bda08g00284 490 SUPERFAMILY CBS-domain pair 357 489 IPR046342 -
Bda08g00284 490 SUPERFAMILY E set domains 21 102 IPR014756 -
Bda08g00284 490 SMART cbs_1 440 489 IPR000644 -
Bda08g00284 490 SMART cbs_1 177 226 IPR000644 -
Bda08g00284 490 SMART cbs_1 359 407 IPR000644 -
Bda08g00284 490 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Bda08g00284 490 Gene3D - 338 490 IPR046342 -
Bda08g00284 490 ProSiteProfiles CBS domain profile. 171 231 IPR000644 -
Bda08g00284 490 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 489 - -
Bda08g00284 490 Pfam CBS domain 441 489 IPR000644 -
Bda08g00284 490 Pfam CBS domain 357 403 IPR000644 -
Bda08g00284 490 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 489 - -
Bda08g00284 490 Gene3D Immunoglobulins 18 101 IPR013783 -
Bda08g00284 490 ProSiteProfiles CBS domain profile. 437 490 IPR000644 -
Bda08g00284 490 SUPERFAMILY CBS-domain pair 153 328 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00284 - - - csv:101215603 823.928
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00284 Bda13g00180 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00180 Bda-Chr13:2307056 Bda08g00284 Bda-Chr8:2949382 0 wgd
Bda03g01197 Bda-Chr3:14510541 Bda08g00284 Bda-Chr8:2949382 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g332 . Blo12g00021 . Bda08g00284 Bpe04g01128 Bpe14g01135 . Bma05g01047 Cmo08g01189 . . . . . . . . . . . . . . . Cla06g00493 Cam06g0530 Cec06g0530 Cco06g0534 Clacu06g0514 Cmu06g0516 Cre06g1287 Cone14ag0773 Cone15ag0779 . . . . Chy11g01484 . Blo02g00514 . . Bda13g00180 Bpe05g00844 . . . Sed09g0226 . . Cma08g01216 . Car08g01087 Car17g00287 Cpe12g00265 Cpe17g00011 Bhi12g02085 Tan06g2644 Cmetu11g2330 . Hepe03g0116 . Lcy13g0190 . . . . . . . Lsi09g01414 . . Cme11g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004087 3 2 2 1 3 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 3 3 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00284 Bda_Chr08 FPKM 67.315155 78.416534 49.260658 48.737312 54.447803 57.27562 49.185776 58.488647 51.785156