Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00291 ATGGGCGGCCAGATGCAGCAGAGCAATACTGCTGCGGCTGCCGCTTTCTATGATCACTCTGGCGGTGGGTCCCTTCACAATGCGGGTCCCACGAGCGATGCTGGTGATGCGGTCATGGCCCGGTGGTTGCAGTCTGCTGGTTTGCAGCATCTGGCGTCTCCATTAGCTTCCAGTGGCATCGATAACCGGCTCCTTCCCAATTTTATTGTGCAGGGTTATGGGCCTCAATCTGCGGAAGAGAAACAGAGACTTTTTAAGTTGATGAGAAACCTCAATTTGAATGAATCTGGTTCTGAGCCACATACACCTACTGCCCAAAGTTCAGGAATGGTTGCCGCAACAGAGGGTTATTACTCTCCTGAGTTCCGAGGGGATTTTGGAGCTGGGCTTCTGGATCTTCATGCTATGGATGATACAGAGCTTTTATCTGAGCATGTAATGTCTGAACCTTTTGAGCCCTCGCCATTTATGCCTGGTGGTACTAGAGCATTTGAGGATAGTCTTAACATGAATAGTAGCTGGCAACAAAGAGGTCAACCCGATGGAGATTCAATGGCTACGTTACCCGTGATTGAAAAAGAAAATACTGCAAAAGAATCCAATGTGGCAAAAATTAAAGTGGTGGTACGGAAAAGACCTCTAAACAAGAAGGAACTTTCGCGTAAGGAGGAGGACATTGTTACAGTTTGTGATAATGTCTCCTTGGCTGTTCATGAACCCAAACTGAAGGTGGATTTGACTGCTTATGTGGAGAAGCACGAGTTCTGCTTTGATGCTGTTCTTAACGAGCAAGTCTACCGTGAAACTGTGGAACCAATCATTCCTACCATCTTTGAGAGAACGAAGGCTACCTGCTTTGCTTATGGTCAAACAGGTTTCGGTAAGACCTTCACAATGCAACCATTACCTCTCAGAGCTGCTGGAGATCTTGTTAAGTTTTTGCATCAACCTTTATACCGTAATCAGAGATTCAAGTTGTGGCTTAGCTTTTTTGAGATATATGGAGGAAAATTGTTTGACCTTCTTAGTGATAGAAAGAAACTTTGTATGAGAGAGGATGGAAGGCAACAAGTTTGCATTGTTGGATTGCAAGAATTTGAAGTCTCTGATGTACAAATTGTGAAAGAATTCATCGAGAAGGGTAATGCTGCAAGAAGTACAGGATCTACCGGTGCTAATGAAGAGTCTTCTAGGTCTCATGCTATTTTGCAATTAACTGTTAAAAAACACAACGAGGTAAAAGATTCTAGAAGGAACAATGATGGAAATGAGTTGAAAGGCAGCAAGGTTATTGGGAAGATTTCATTTATTGATCTTGCCGGTAGTGAAAGAGGGGCTGACACCACGGATAATGACCGTCAAACTAGGATTGAAGGAGCGGAAATTAACAAGAGTCTTTTAGCTCTTAAGGAATGTATTCGTGCTCTTGACAATGATCAAATTCATATACCGTTTCGGGGTAGCAAACTCACAGAAGTACTTCGAGACTCGTTTGTTGGCAATTCTAGAACTGTTATGATTTCTTGTATATCTCCAAATGCCGGCTCATGTGAACATACTCTCAATACTTTGAGATATGCGGATAGCAGGGTTAAAAGTTTGTCCAAAGGTGGAAATGTCAAAAAAGATCAGGCCAGTTCTTTACCATCAAATGCGAGTTCTTTACCACCAACTAGTAAGGATGTTTCCTCAAGGTCATCTATATCTGTTTCTTCTGGCACAGAAGACAGTCATTTGCAACGTCAAGAGCTGAAATTATTGGACCCAAGCAAGAGGGTTGCAGAAAAAGAAACCATCTCTACGGACTTCGACAAACAAAATACAAATTATCCATCTAGCCTTGGCTTCAATGGACGAGAGGAAAAAGGTTTAGCATCTGGCGTTGGAGGCAAGGAGAGGATTGAGATGAAAAATTTTCAGAGTGATATTACTACTCAGAAGATTTCCTCCTCTTCCCAAAATATTGCAGATGCCGACGAGAAGGTGCAGAAAGTCTCGCCTCCCCGTAGAAAATCATCTCGAGAGGAAAAATCAGAAAAGTTGGGGAATTGGCTGAAAAAAGAAAGCAGTGCATCAGACCTCTCCTCGACGAGCACCAAGACATATGGAACAAGCAATTATAATTCAAATAACGTTGGATCAAGACAAAGTGAACCTGAACCAATGGATGATGGTAATATCACTGCCATTCTTGAGGAAGAAGAGGCCTTAATAGCTGCTCACAGAAAAGAGATCGAAGATACCATGGAGATCGTCCGCGAGGCAAGTTCTATCAATTTTCTTTTGGGTATTGAATTTATGCTTGAAATGAAATTACTTGCAGAAGTGGATCAACCGGGGAGTCAGATCGACAATTACGTGACCCAGTTGAGATTTGTGCTCTCTCGAAAGGAAGCCGGTCTGGTCAGTCTTCAGGCTCGTCTTGCAAGATTTCAGCACCGACTAAAGGAGCAAGAGATTCTCAGCCGAAAAAGGATACCTCGATAG 2487 43.06 MGGQMQQSNTAAAAAFYDHSGGGSLHNAGPTSDAGDAVMARWLQSAGLQHLASPLASSGIDNRLLPNFIVQGYGPQSAEEKQRLFKLMRNLNLNESGSEPHTPTAQSSGMVAATEGYYSPEFRGDFGAGLLDLHAMDDTELLSEHVMSEPFEPSPFMPGGTRAFEDSLNMNSSWQQRGQPDGDSMATLPVIEKENTAKESNVAKIKVVVRKRPLNKKELSRKEEDIVTVCDNVSLAVHEPKLKVDLTAYVEKHEFCFDAVLNEQVYRETVEPIIPTIFERTKATCFAYGQTGFGKTFTMQPLPLRAAGDLVKFLHQPLYRNQRFKLWLSFFEIYGGKLFDLLSDRKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEFIEKGNAARSTGSTGANEESSRSHAILQLTVKKHNEVKDSRRNNDGNELKGSKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADSRVKSLSKGGNVKKDQASSLPSNASSLPPTSKDVSSRSSISVSSGTEDSHLQRQELKLLDPSKRVAEKETISTDFDKQNTNYPSSLGFNGREEKGLASGVGGKERIEMKNFQSDITTQKISSSSQNIADADEKVQKVSPPRRKSSREEKSEKLGNWLKKESSASDLSSTSTKTYGTSNYNSNNVGSRQSEPEPMDDGNITAILEEEEALIAAHRKEIEDTMEIVREASSINFLLGIEFMLEMKLLAEVDQPGSQIDNYVTQLRFVLSRKEAGLVSLQARLARFQHRLKEQEILSRKRIPR 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3049796 3056251 - Bda024725.1 Bda08g00291 11147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00291 828 Coils Coil 801 821 - -
Bda08g00291 828 SMART kinesin_4 202 540 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g00291 828 MobiDBLite consensus disorder prediction 688 717 - -
Bda08g00291 828 MobiDBLite consensus disorder prediction 535 724 - -
Bda08g00291 828 ProSitePatterns Kinesin motor domain signature. 432 443 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bda08g00291 828 PANTHER KINESIN-LIKE PROTEIN 674 827 - -
Bda08g00291 828 PRINTS Kinesin heavy chain signature 433 451 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g00291 828 PRINTS Kinesin heavy chain signature 280 301 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g00291 828 PRINTS Kinesin heavy chain signature 483 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g00291 828 PRINTS Kinesin heavy chain signature 390 407 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g00291 828 MobiDBLite consensus disorder prediction 639 659 - -
Bda08g00291 828 CDD KISc_KIF2_like 204 532 - -
Bda08g00291 828 PANTHER KINESIN-RELATED PROTEIN 6 5 678 - -
Bda08g00291 828 PANTHER KINESIN-RELATED PROTEIN 6 674 827 - -
Bda08g00291 828 MobiDBLite consensus disorder prediction 578 602 - -
Bda08g00291 828 Coils Coil 731 751 - -
Bda08g00291 828 MobiDBLite consensus disorder prediction 662 686 - -
Bda08g00291 828 Gene3D Kinesin motor domain 184 536 IPR036961 -
Bda08g00291 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 528 IPR027417 -
Bda08g00291 828 MobiDBLite consensus disorder prediction 539 577 - -
Bda08g00291 828 PANTHER KINESIN-LIKE PROTEIN 5 678 - -
Bda08g00291 828 Pfam Kinesin motor domain 210 529 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g00291 828 ProSiteProfiles Kinesin motor domain profile. 204 533 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00291 K10393 KIF2_24, MCAK; kinesin family member 2/24 - vvi:100240940 1202.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00291 Bda-Chr8:3049796 Bda12g00631 Bda-Chr12:29309413 2.50E-20 dispersed
Bda08g00291 Bda-Chr8:3049796 Bda01g00576 Bda-Chr1:32754377 1.13E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g296 . . . Bda08g00291 . . . . Cmo08g01203 Cmo17g00316 . . . . . . . . . . . . . . Cla06g00478 Cam06g0512 Cec06g0513 Cco06g0516 Clacu06g0496 Cmu06g0498 Cre06g1269 Cone14ag0761 Cone15ag0770 . . . . Chy11g01510 . . . . . Bpe05g00836 . . . Sed02g1073 . . Cma08g01228 Cma17g00327 Car08g01104 Car17g00301 Cpe12g00278 Cpe17g00027 Bhi12g02054 Tan06g2680 Cmetu07g0697 . . . . . . . . . . . Lsi09g01431 . . Cme11g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007921 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00291 Bda_Chr08 FPKM 1.933107 3.731411 3.890779 3.200833 6.441896 4.771038 6.960884 7.135927 6.921115