Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00295 ATGAATCCAAACTCTTCTTGTTCTCCAACGTCGAATCTATCCCCGGACGATAATAAACCTGGCCTGGATTTGATAAGGGCGATTGTAGTTTTGATCAACCATTACATTCTCGAGTTCTTGACAGATAGCAAAACAAGGAGTTTGCTGAAATTGAAATGTGCCTCCAAGTTAAGCAATCAAAAGCAGGAGTTCTTCGAATTCTCCGACCAGTCGGTTCTGTCGAATCTTTACTGGGGCATCGAGAATATGGAAGCTGCAATTCAGGCCGATACGGAGGAAGAGAGAGCATCCCGGCTGAAGAACTCAGAGCAAATGCTTCAGGTCCCAGCGCTTCTCGACGAGCAAGAACTAACTGTTGGAGTTCCAAACAGTTACTTAGTTTGCTGTTCTTACTTTTACCTTTCAATGGTGAAGAAGCTTCAGATGAATGAGTTGCAGGTTGCTCTGCATTTCCTCCAAGCTCTAATGGTGTCTCCAAAGTTAATTCAGGAAGAATTTGCTCCAGAGCTATGCAGTAGTTTTCTCTCTTCAAACTGGGAAGAACTCAGAGAAAGATTCAGTGTTGAAGAACATGTTAAAGCAATGAGGAAGATGGCAAGAACATACAAGAAATGGTTGATGTATTATCAGGTTATATTATATGGAGAATCTCCAATTTGGCACAAGAAATTGAGAGGTTCTTTGTCCGATGAACACGAGCAGCAATGGCCTCATGTAAGTTTTGATTCAATTCACTTCAAATATGGGCATAATTTGTTGATCTGTTGCCTTGGCAAAACCTTAACACAAGATTCAACACTTAAAAAACAGAAATTACATCAATTCATGAGAGATTTTTTGGACTATAAAACCAGTAAAAAAAAACCCATTTTTCAAGTAGAATCTCTTGGAAATTCCAATTTTTTTGTCATGGATATGAATATTCAGTGTCTGTTCATAGCAGGAATAGAGTATTCCACAGTGCAGAAACTTCTGATTCCAGTGGAGATGGACAGCCCCCAAAAAGTGTTTACCAAGAATTTGCAGCTCCCCACCTGTACATCCGGCCAAAAGCGAAAAGCGGCGCCTTTTCCGAGATGTCTACAAAAAAGTATTCAAGAACAAGATATCAAAGTACAAGTAACTGAACTATTTACCAGCGCCATAACCGATTACAGCATATTTAGCCGGGACCATATAGAGGAAAAAACTGGTATTTTAAGTAATTGTCGAGTCGAAGATGAACTAACATGGCGGGAAAGGAAAGTCAACAAGTTCCAGCTCTTAGGTCATGCCCAAGCTATGTCTCTGAAGAACTGCAGGGCCAAACAGATGAATCACCAGAAAATTGGTTTGAGGAGAGTAAAGAGCACACACTGCCAGAGAAATATCAGTGAAGTTTATTCCTTTTCTGGAAAAAAATCCATGAGTGAGTTATCGGGATTGGTGAGAAGGGCAATTTCAAAGCTAAGTTTCTCCGAAGAGATGGAAAAGTGGGATGAAGATTATGCTGTGGAAGTATCAACGGTTTACACAATGTTGAACAGCAAAACAGGAGTGAGATATAACAAGCTGAAGGAAGTAATCATAAATAAACTCGTAAGAGGAATTTCTACCTATAAAGAGGAGAAGATATTAAGAGCAGCTGTGTCGATATTGGTATCCATCATTTCCACAAATGGCTCCGTCGTAGAAGATATCAAGAAGAACGGTTTACGGCTGTGCGATCTCGCGAGCGCGCTGAAGAAAAATGTGTACGAGGCGGCGATCCTTATCTATCTAATCAATCCAACTCCTTCAGAAATCAAGTCTTTAGAGCTTCTACCGACGTTGGTCGAAGTTGTGTGCGGTTCAAACGATTATCAGGAACGGCCGGCATCACTCCAGCTAACGCCGCCGACGGCGTCGCTAATGATTATCGAAGTTCTGGTGACTGCATTTGACGATGCCACGAACAATAAGCACTTGGCTGCTCTCAGTTCTCCCACTGTTCTTTGCGGGCTTCTGGAATTCGCGACGATCGATAACGTCGAAGAGTTGATCTCTCTGGCCACAATTCTCGTAAAGTGCATTCAATTTGACGGAAAATGCAGAAAGTTTATGTCGGAATTCTCTCCCGTCGCTCCGTTCATCTATCTCCTCAAGTGTAACAGCGATCGGGCCATGTTCATAGCGCTTGAATTTCTCCATGAAGTACTTTGCATTCCAAGGTCATCGACCGTTTCCTTGCTGCATAGGATTCAAAGAGAAGGAAGAAATGAATTGATGAACATACTAATGTTTTGTGTTAAACACCTCCAACATGAGTATCAAATCTTGGGTGCAAGTTTGCTGATTCAGCTATGCACAATGAACAGTAGCTCAAATACAAGCGAGTACAAAGAGGAGGCCATACACACCCTCATCAGATCAGTGGGATCTGAAGAATGCTCCAATTCACAGCTACTTTCTGCTTTGATTTTATCAAATCTTGGAGGGACATATTCCTGGACCGGGGAATCCTATACAGTACCATGGCTGGTCAGAAAATCAGGATTGAGCTCCATCACTCACCAAAACACGATCAAGAATGTCAACTGGTCAGACCAAATCCTGCAGGATGCCGGAACGGACTTGTGGTCCGGCATGATTGCCGGAAGCTTTATTGAAGTTGGTAATCCGGTCTTCCATGCCTTGGCAAATGGGTTAAAGAGCAAAATAAAGAAGGTTTCTAGAGACTGTCTTGTGGCAGCTGCATGGCTTGGATGTGAAATCGCACGGAGTCCGGAGAGCACGAGATGTTCGGCCTGTGAGATTTTGTTGGGTGGATTTGAGCAGTTTTTGCACCCCGGATCGGAACTCGATGAACGGCTTCTCGCTTGTCTCTGTATATATAATTTCACTTCAGGAAAAGGGATGCAAAACTTGATTCATTTCTCCGAAGGAGTGAGGGAATCGTTAAGACGTCTTTCGAGCGTAACCTGGATGGCGGAGGAATTGCACAAAGTAACAGATTACTTTCTGCCCAATAGTTCAAGAATATCATGTGTTCACACTCAAATCTTGGAGATGGGTATCAGAAGCTGTGGAGCTGTATGTTCTCTCATCTACTACAAAGGACTGTTGTACAGCGGATACTCGGACGGCTCAATGAAGGTTTGGAATATCAGCAGGCAATCGAGCACCCTTATATGGGACGTAAAGGAGCACAAGAGGGCAGTCACATGCTTCACCCTTTCGGGTACCGGAGACAACCTGCTTAGTGGATCTGCAGATAAAACTATCCGGGTATGGAAGGCGATTACTTCCATAGAAACTTGTTTTTTTCAGCAATTGGAGTGCATTGAAGTAATTACCTTTAAGGAACCAATTCAGCATATAGAATCATGTGGTGACACGATTTTTACTGTTACCCAGGGGCGAGGGGTGAAGGTGTTTGATACCACCAGAGAAGTCAAAGTCATTTGCAAGGATAAGCAAGTGAAATGCATAAAGGCAGCTCAGGGTAAAATCTATGCAGGCTGCATGGACTCAAGCATACAGGAATTCTCGATAATGAACAATCGAGAGCAAGAGATCAAAGCCCCATTGAAAAGTTGGAGAATTCTGCGCGATCCTATAAACACAATCTTCGTATATAAAGATTGGCTTTTCAGTGCCAATTCAACAGTCCAAGGCTCACAATTGCAGGAATGGAGAAGACATTGCAAACCTCAGTTGTCGATTGCGACAGGGAAAGGAGAAACTTTGCAGGCAATGGGGGTTGTTGAAGACTTTATATACTTAATCTCCAGATCATCAACAAACATTCAGATTTGGTTGCGAAGAACGCAGCATAAAGTAGGGAGAATTTCGGCAGGCAGCCGGATAACAAGTCTACTCACAGGCAACGACATCGTTCTATGCGGCACAGATACGGGTATAATTAAAGTACGTATCCTCAGATCGATCTATTTCTTTGCATCTCATTCACTCGATTGA 3939 42.83 MNPNSSCSPTSNLSPDDNKPGLDLIRAIVVLINHYILEFLTDSKTRSLLKLKCASKLSNQKQEFFEFSDQSVLSNLYWGIENMEAAIQADTEEERASRLKNSEQMLQVPALLDEQELTVGVPNSYLVCCSYFYLSMVKKLQMNELQVALHFLQALMVSPKLIQEEFAPELCSSFLSSNWEELRERFSVEEHVKAMRKMARTYKKWLMYYQVILYGESPIWHKKLRGSLSDEHEQQWPHVSFDSIHFKYGHNLLICCLGKTLTQDSTLKKQKLHQFMRDFLDYKTSKKKPIFQVESLGNSNFFVMDMNIQCLFIAGIEYSTVQKLLIPVEMDSPQKVFTKNLQLPTCTSGQKRKAAPFPRCLQKSIQEQDIKVQVTELFTSAITDYSIFSRDHIEEKTGILSNCRVEDELTWRERKVNKFQLLGHAQAMSLKNCRAKQMNHQKIGLRRVKSTHCQRNISEVYSFSGKKSMSELSGLVRRAISKLSFSEEMEKWDEDYAVEVSTVYTMLNSKTGVRYNKLKEVIINKLVRGISTYKEEKILRAAVSILVSIISTNGSVVEDIKKNGLRLCDLASALKKNVYEAAILIYLINPTPSEIKSLELLPTLVEVVCGSNDYQERPASLQLTPPTASLMIIEVLVTAFDDATNNKHLAALSSPTVLCGLLEFATIDNVEELISLATILVKCIQFDGKCRKFMSEFSPVAPFIYLLKCNSDRAMFIALEFLHEVLCIPRSSTVSLLHRIQREGRNELMNILMFCVKHLQHEYQILGASLLIQLCTMNSSSNTSEYKEEAIHTLIRSVGSEECSNSQLLSALILSNLGGTYSWTGESYTVPWLVRKSGLSSITHQNTIKNVNWSDQILQDAGTDLWSGMIAGSFIEVGNPVFHALANGLKSKIKKVSRDCLVAAAWLGCEIARSPESTRCSACEILLGGFEQFLHPGSELDERLLACLCIYNFTSGKGMQNLIHFSEGVRESLRRLSSVTWMAEELHKVTDYFLPNSSRISCVHTQILEMGIRSCGAVCSLIYYKGLLYSGYSDGSMKVWNISRQSSTLIWDVKEHKRAVTCFTLSGTGDNLLSGSADKTIRVWKAITSIETCFFQQLECIEVITFKEPIQHIESCGDTIFTVTQGRGVKVFDTTREVKVICKDKQVKCIKAAQGKIYAGCMDSSIQEFSIMNNREQEIKAPLKSWRILRDPINTIFVYKDWLFSANSTVQGSQLQEWRRHCKPQLSIATGKGETLQAMGVVEDFIYLISRSSTNIQIWLRRTQHKVGRISAGSRITSLLTGNDIVLCGTDTGIIKVRILRSIYFFASHSLD 1312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3086982 3095208 - Bda024729.1 Bda08g00295 11151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00295 1312 SUPERFAMILY ARM repeat 522 973 IPR016024 -
Bda08g00295 1312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1053 1085 - -
Bda08g00295 1312 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 1299 - -
Bda08g00295 1312 Gene3D - 948 1308 IPR015943 GO:0005515
Bda08g00295 1312 PANTHER OS04G0584500 PROTEIN 5 1299 - -
Bda08g00295 1312 ProSiteProfiles Trp-Asp (WD) repeats profile. 1053 1085 IPR001680 GO:0005515
Bda08g00295 1312 SUPERFAMILY WD40 repeat-like 1016 1297 IPR036322 GO:0005515
Bda08g00295 1312 SMART WD40_4 1134 1170 IPR001680 GO:0005515
Bda08g00295 1312 SMART WD40_4 1046 1085 IPR001680 GO:0005515
Bda08g00295 1312 SMART WD40_4 1001 1041 IPR001680 GO:0005515
Bda08g00295 1312 SMART WD40_4 1097 1133 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00295 - - - qsu:112013161 1326.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00295 Bda-Chr8:3086982 Bda09g01144 Bda-Chr9:42193131 9.22E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g186 Blo01g00069 . . Bda08g00295 . . . Bma05g01030 . . . Cma14g01615 . Car14g01438 . . Cpe03g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00830 . . . . . Cmo14g01653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009269 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00295 Bda_Chr08 FPKM 0.589041 0.0 0.420992 1.37109 0.621502 0.25828 0.199219 7.37248 9.062691