Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda08g00299 | ATGGTTGTCGCCGTTGCCGTCGGCGTTGGCCGTGGCTCTGGGCAATCTTCGACAGCCGAAAGTTCTCCTCCCGCCGTGGAACAAGTTTCCACGTCGGAGAAGGCGATCAAGGCAATCTGTCAACCTACGGATTACCGAGAGACCTGCGAGGAAAGCCTTTCAGCTGCCGCCGGAAATACCAGCGACCCGAAAGAGCTCGTAAAAGCTGGATTTAAGGTCGCCATTAGTGAGCTAACAGCCGCCATTAGGAACTCGACGACCTTGCAAGAGCTTGCAAAAGAACCAAGAACTAATCAGGCTCTTCAAAACTGTCGCGAGCTGATCCAATACGCCATTGACGACCTTAACGAATCTTTCACAAGAATCGGAGCCTTCGAGATTGCCAAACTCGATGACTACATCGCGGACCTAGAAGTCTGGCTGAGCGCCTCCCTCACATACGAGCAGACATGCTTGGACGGATTCGAAAACACCACCGGCGACGCAGGAGAGCAGATGAAGAAAATTCTGAAAAAATCGCAGCAGCTTACCAGCAATGGGTTGGCAATGGTGACGGAAATCTCCTCCATTTTGGCCTCCTTCCAGATACCCACAACAAGCAGAAGGAGTAAGAATTTTATTGATGGAACTCCTACGTTCAAGACTGCAACTGTTTCTGTGATCGGAAACAATTTCATTGCCAAGAACATCGGATTCGAGAATTCCGCCGGAGCAGAAAAGCACCAAGCGGTGGCGCTCCGAGTTCAGTCCGACATGTCCATCTTCTACAACTGCCAAATGGACGGATATCAAGACACTCTCTACACCCACACTAACCGCCAATACTACCGTGACTGCACAATCTCCGGCACCATAGACTTCATCTTCGGCAACGGCGCCGTCGTTCTCCAGAACTGCAAAATGGTCGTCCGTAAGCCACTGGACAACCAGCAGTGCATCGTCACTGCTCAGGGAAGACTCGACCGGCGAGAACCCACCGCTCTGATTCTCCAAAACTGCACCATCACTTCCGACCCAGCCTACTACCCCTTCCGCAATCAAAACAAAGCTTACCTTGGTCGGCCATGGAAAGAGTATTCAAGAACCATAATCATGCAGTCTCAGATAGACAATCTGATTCAGCCGGATGGATGGTTGCCATGGATGGGAGATTTCGCTCTGAAAACTTGCTTCTACGCGGAGGTTGATAATCGAGGCCCAGGTTCAGTGCAGACGAACAGAGTGAAATGGAGAGGAATCAAGAAGATCACTTCTCAACATGCAGTGAAATTCACAGCAGAAAGGTTCATTCAGGGAAATCAATGGATAAAGGCCGCTGGAGTGCCTTATTCTCCCGGAATGATAGCCGTATAG | 1353 | 50.48 | MVVAVAVGVGRGSGQSSTAESSPPAVEQVSTSEKAIKAICQPTDYRETCEESLSAAAGNTSDPKELVKAGFKVAISELTAAIRNSTTLQELAKEPRTNQALQNCRELIQYAIDDLNESFTRIGAFEIAKLDDYIADLEVWLSASLTYEQTCLDGFENTTGDAGEQMKKILKKSQQLTSNGLAMVTEISSILASFQIPTTSRRSKNFIDGTPTFKTATVSVIGNNFIAKNIGFENSAGAEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHTNRQYYRDCTISGTIDFIFGNGAVVLQNCKMVVRKPLDNQQCIVTAQGRLDRREPTALILQNCTITSDPAYYPFRNQNKAYLGRPWKEYSRTIIMQSQIDNLIQPDGWLPWMGDFALKTCFYAEVDNRGPGSVQTNRVKWRGIKKITSQHAVKFTAERFIQGNQWIKAAGVPYSPGMIAV | 450 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3130964 | 3132764 | - | Bda024734.1 | Bda08g00299 | 11155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda08g00299 | 450 | PANTHER | PECTINESTERASE | 1 | 195 | - | - | |
| Bda08g00299 | 450 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 29 | 186 | IPR006501 | GO:0004857 | |
| Bda08g00299 | 450 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 30 | 186 | IPR035513 | - | |
| Bda08g00299 | 450 | SMART | PMEI_2 | 31 | 183 | IPR006501 | GO:0004857 | |
| Bda08g00299 | 450 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 34 | 188 | IPR035513 | - | |
| Bda08g00299 | 450 | PANTHER | PECTINESTERASE | 203 | 447 | - | - | |
| Bda08g00299 | 450 | SUPERFAMILY | Pectin lyase-like | 201 | 446 | IPR011050 | - | |
| Bda08g00299 | 450 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
| Bda08g00299 | 450 | MobiDBLite | consensus disorder prediction | 8 | 30 | - | - | |
| Bda08g00299 | 450 | Pfam | Plant invertase/pectin methylesterase inhibitor | 35 | 183 | IPR006501 | GO:0004857 | |
| Bda08g00299 | 450 | PANTHER | PECTINESTERASE | 1 | 195 | - | - | |
| Bda08g00299 | 450 | PANTHER | PECTINESTERASE | 203 | 447 | - | - | |
| Bda08g00299 | 450 | Pfam | Pectinesterase | 203 | 433 | IPR000070 | GO:0030599|GO:0042545 | |
| Bda08g00299 | 450 | Gene3D | - | 187 | 438 | IPR012334 | - | |
| Bda08g00299 | 450 | ProSitePatterns | Pectinesterase signature 2. | 281 | 290 | IPR033131 | - | |
| Bda08g00299 | 450 | CDD | PMEI-like_3 | 38 | 189 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda08g00299 | Bda-Chr8:3130964 | Bda12g00427 | Bda-Chr12:5239006 | 3.73E-65 | dispersed | |
| Bda14g01055 | Bda-Chr14:9011639 | Bda08g00299 | Bda-Chr8:3130964 | 1.48E-28 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda08g00299 | K01051 | - | jre:108999678 | 421.394 |