Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00304 ATGAATCTGAATCACGGCAAGGCATCGATGCCTACAGCCGTTTGTAGTGCTGCTCTTAAATCCGGCGAAGTTGTTTCCGACCAATTTCCGGCTGGTCTGCGAGTTCTGGTCGTCGATGACGATCCGACCTGCCTGAGAATCTTGGATAAGATGCTTCAATTTTGTCTCTACCACGTTTCTATGTGCAATCGAGCCGAGACTGCGTTGTCTAAGCTTCGAGATAACAAAAATGGATTCGATATCGTAATTAGTGATGTCCATATGCCGGACATGGATGGATTTAAGCTCTTAGAGCACATTGGCCTAGAAATGGACCTACCAGTTATCATGATGTCTGCCGATGAAAGCAAAGATGTTGTCATGAAGGGAGTTACTCACGGAGCTTGCGATTATTTAATAAAACCTGTTCGAATTGAAGCTTTGAAGAACATATGGCAACATGTAGTTCGGAGGAGGAAGAATGAGTGGAAGGATCTAGAACAATCCGGAAGTGTGGAAGACGGGGATCGGCAACCAAAACTGTGCGATGACGCGGATTACTCGTCCTCGTTAAATGATGGAAGTTGCAAAAGCTCGAAGAGGAGGAAAGACGATGAAGAAGAAGCTGAGGAACGAGATGATTCGTCGACGTTGAAGAAGCCACGCGTGGTTTGGTCGGTCGAGCTTCATCAGCAGTTTGTCGCAGCTGTTAATCAACTCGGCATTGACAAGGCCGTTCCTAAGAAAATTTTGGAGCTGATGAATGTTCCGGGACTCACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGGTTGTATCTAAGAAGGCTAAGCGGAGTCGCACAATACCCTAGTAATTTGAACAATTCCTTCATCAACCCACAAGAAGCAATTTTCGGGCCAGTTTCAGCGTTCAACGAGATCAATCTTCAGGCTCTTGCCATGACAGGAAAACTCACACTCCAAAGTCTCGCCTCGCTTCAAGCTGCCGGCCTGAGTAGATCTTCTTCATCAAAATCCGGCGTAATTTCCGATCAACAGAAAATATTTAGTTTTGAGAATCCCAAACTGAGATTTGGTGAGGCCCAGCCTCAGCATCTCAACAGTAGTAAACCAATAAATTTACTGCATGGAATTCCCACCACCATGGAAGCAAAGCAGCTTGCAAATTTGAACCATGGAAGCATAAATATGCAAGGTAATATCCATGGAGGCCAAAACAACTCTTTATTAACCCAGATGACTCAACCTCAATCATCAATCAGACAGTCTGTTAGAATTCCAGGTGGGGTTCCGAAGAACAATTTGATTCCGCCAGAATCGTCTATCTTCAGTTTTCCGGCGAACCAAACAGCTGAATTCCCGGGAAATAATTTGCCTCTTCAAACGGCTCCATCTAAAGGGCCATTCTTGGAAGAATCAAATCTAGAAACAAAACAATCAGGAAGATTTGTATCAAATTATGATATATTAGATGATTTGCAGAATCCCAGTTTGAACTTCAATGCCTCTCAAGGCAACCTGAATATCTCATCTTCGGGTTTATATCATCAAAGCTTTCCCTCCGGCCAAAGGATCAGACAAGAAAGCGATGTTTCTACAGCTCGACCTGAGAACGGACAGATCATTAGACAGCAACTAAATTCTGTTCTTTTTGACAATCCGGTGAGGGTTAAAGCCGAGACAATCCCAGATCCAAGCTGCGTCTTATTCCCTGAAAACTTCATTCGGGACGATCTAATGAGTACCCTTTTCAGACAAGTTAGTTTCCTACAACTTTTCTTCTCTGTTTGTTTTCGATGA 1785 43.7 MNLNHGKASMPTAVCSAALKSGEVVSDQFPAGLRVLVVDDDPTCLRILDKMLQFCLYHVSMCNRAETALSKLRDNKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADESKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRRKNEWKDLEQSGSVEDGDRQPKLCDDADYSSSLNDGSCKSSKRRKDDEEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVAQYPSNLNNSFINPQEAIFGPVSAFNEINLQALAMTGKLTLQSLASLQAAGLSRSSSSKSGVISDQQKIFSFENPKLRFGEAQPQHLNSSKPINLLHGIPTTMEAKQLANLNHGSINMQGNIHGGQNNSLLTQMTQPQSSIRQSVRIPGGVPKNNLIPPESSIFSFPANQTAEFPGNNLPLQTAPSKGPFLEESNLETKQSGRFVSNYDILDDLQNPSLNFNASQGNLNISSSGLYHQSFPSGQRIRQESDVSTARPENGQIIRQQLNSVLFDNPVRVKAETIPDPSCVLFPENFIRDDLMSTLFRQVSFLQLFFSVCFR 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3176640 3179261 + Bda024739.1 Bda08g00304 11160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00304 594 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Bda08g00304 594 CDD REC_typeB_ARR-like 35 149 - -
Bda08g00304 594 MobiDBLite consensus disorder prediction 189 210 - -
Bda08g00304 594 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Bda08g00304 594 SMART REC_2 33 145 IPR001789 GO:0000160
Bda08g00304 594 Gene3D - 33 166 - -
Bda08g00304 594 SUPERFAMILY CheY-like 32 156 IPR011006 -
Bda08g00304 594 Gene3D - 210 272 - -
Bda08g00304 594 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 413 IPR045279 GO:0009736
Bda08g00304 594 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Bda08g00304 594 MobiDBLite consensus disorder prediction 156 210 - -
Bda08g00304 594 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Bda08g00304 594 MobiDBLite consensus disorder prediction 156 176 - -
Bda08g00304 594 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Bda08g00304 594 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 413 - -
Bda08g00304 594 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Bda08g00304 594 PIRSF RR_ARR_type-B 15 561 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00304 - - K14491 tcc:18603588 691.804
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01158 Bda08g00304 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01795 Bda-Chr1:54160869 Bda08g00304 Bda-Chr8:3176640 8.04E-127 dispersed
Bda07g01879 Bda-Chr7:36209687 Bda08g00304 Bda-Chr8:3176640 1.18E-49 dispersed
Bda08g00304 Bda-Chr8:3176640 Bda11g00187 Bda-Chr11:2406265 4.81E-132 dispersed
Bda03g00918 Bda-Chr3:8109038 Bda08g00304 Bda-Chr8:3176640 1.63E-44 transposed
Bda03g01158 Bda-Chr3:12761839 Bda08g00304 Bda-Chr8:3176640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g113 Blo01g00060 . Bda03g01158 Bda08g00304 Bpe04g01103 . Bma04g01144 Bma05g01022 Cmo08g01225 Cmo17g00339 Cma06g01548 . Car06g01314 Car14g01419 Sed02g1152 Cpe08g00165 Cpe03g01344 Bhi01g01057 Tan10g1051 Cmetu11g1360 Lac11g0905 Hepe05g1404 . Lcy11g1369 Cla06g00448 Cam06g0476 Cec06g0481 Cco06g0479 Clacu06g0463 Cmu06g0463 Cre06g1238 Cone14ag0738 Cone15ag0748 Cone7ag0120 Cone4ag0123 . Csa06g01765 Chy11g01546 . . Blo07g00160 . . Bpe05g00823 Bpe13g00682 . Bma06g01483 . . Cmo14g01636 Cma08g01254 Cma17g00351 Car08g01126 Car17g00322 Cpe12g00300 Cpe17g00047 Bhi12g01899 . . . . . Lcy12g0777 Cla05g00679 Cam05g0746 Cec05g0752 Cco05g0752 Clacu05g0738 Cmu05g0703 Cre05g0777 Lsi09g01466 Csa03g01497 Chy06g00735 Cme11g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda07g01573 . 1 163 Response Regulator Gene Family AT1G59940 66.5 1.3e-55 213.8
Bda10g01007 . 1 164 Response Regulator Gene Family AT1G59940 66.7 4.8e-55 211.8
Bda11g01678 . 1 150 Response Regulator Gene Family AT1G59940 67.5 3.0e-49 192.6
Bda14g00828 . 15 152 Response Regulator Gene Family AT1G59940 64.0 6.7e-41 164.9
Bda15g00091 . 8 149 Response Regulator Gene Family AT1G59940 58.5 1.4e-38 157.1
Bda07g01573 . 19 192 Response Regulator Gene Family AT1G10470 63.4 1.4e-54 209.9
Bda10g01007 . 28 190 Response Regulator Gene Family AT1G10470 67.5 4.5e-53 204.9
Bda11g01678 . 15 172 Response Regulator Gene Family AT1G10470 65.4 2.3e-49 192.6
Bda14g00828 . 15 168 Response Regulator Gene Family AT1G10470 60.6 1.8e-41 166.4
Bda15g00091 . 10 171 Response Regulator Gene Family AT1G10470 53.1 5.8e-37 151.4
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda11g01678 . 16 172 Response Regulator Gene Family AT5G62920 71.1 2.6e-53 205.3
Bda07g01573 . 30 160 Response Regulator Gene Family AT5G62920 71.8 4.3e-48 188.0
Bda10g01007 . 30 159 Response Regulator Gene Family AT5G62920 74.6 2.8e-47 185.3
Bda14g00828 . 24 174 Response Regulator Gene Family AT5G62920 65.8 2.6e-45 178.7
Bda15g00091 . 10 152 Response Regulator Gene Family AT5G62920 55.2 2.4e-38 155.6
Bda11g01678 . 5 172 Response Regulator Gene Family AT1G19050 65.3 9.2e-52 200.3
Bda10g01007 . 26 189 Response Regulator Gene Family AT1G19050 60.0 1.4e-44 176.4
Bda07g01573 . 31 205 Response Regulator Gene Family AT1G19050 56.0 2.4e-44 175.6
Bda14g00828 . 23 160 Response Regulator Gene Family AT1G19050 69.1 2.7e-43 172.2
Bda15g00091 . 8 154 Response Regulator Gene Family AT1G19050 53.7 6.4e-37 151.0
Bda15g00091 . 1 149 Response Regulator Gene Family AT2G41310 60.9 2.4e-45 179.1
Bda07g01573 . 33 166 Response Regulator Gene Family AT2G41310 58.2 2.8e-41 165.6
Bda10g01007 . 33 170 Response Regulator Gene Family AT2G41310 58.6 3.0e-40 162.2
Bda11g01678 . 19 147 Response Regulator Gene Family AT2G41310 59.4 7.5e-39 157.5
Bda15g00091 . 1 176 Response Regulator Gene Family AT3G57040 54.5 7.5e-50 194.1
Bda07g01573 . 31 167 Response Regulator Gene Family AT3G57040 58.2 1.8e-43 172.9
Bda10g01007 . 31 161 Response Regulator Gene Family AT3G57040 60.7 7.5e-42 167.5
Bda11g01678 . 23 147 Response Regulator Gene Family AT3G57040 61.0 4.1e-40 161.8
Bda14g00441 . 1 144 Response Regulator Gene Family AT3G57040 55.3 9.5e-37 150.6
Bda11g01678 . 21 172 Response Regulator Gene Family AT1G74890 67.5 4.6e-51 198.0
Bda10g01007 . 23 163 Response Regulator Gene Family AT1G74890 68.1 9.9e-46 180.3
Bda07g01573 . 25 162 Response Regulator Gene Family AT1G74890 66.7 1.3e-45 179.9
Bda14g00828 . 21 174 Response Regulator Gene Family AT1G74890 63.5 1.9e-44 176.0
Bda15g00091 . 4 154 Response Regulator Gene Family AT1G74890 53.0 3.1e-39 158.7
Bda10g01007 . 30 161 Response Regulator Gene Family AT2G40670 62.2 8.5e-40 160.2
Bda07g01573 . 30 157 Response Regulator Gene Family AT2G40670 61.1 1.1e-39 159.8
Bda11g01678 . 23 147 Response Regulator Gene Family AT2G40670 61.8 1.4e-37 152.9
Bda07g01573 . 16 157 Response Regulator Gene Family AT3G56380 57.7 5.0e-42 167.5
Bda10g01007 . 22 161 Response Regulator Gene Family AT3G56380 61.0 5.0e-42 167.5
Bda11g01678 . 16 147 Response Regulator Gene Family AT3G56380 59.0 1.1e-38 156.4
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda03g00757 . 65 297 Response Regulator Gene Family AT5G60100 58.7 6.3e-68 255.0
Bda14g00095 . 41 303 Response Regulator Gene Family AT5G60100 54.4 7.2e-64 241.5
Bda08g00081 . 24 157 Response Regulator Gene Family AT5G60100 61.9 1.1e-43 174.5
Bda14g00095 . 175 316 Response Regulator Gene Family AT5G02810 59.1 2.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001295 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16251 PF00072 Response_reg 3.50E-22 CL0304 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00304 Bda_Chr08 FPKM 2.384558 2.276111 70.409653 71.411766 2.634604 3.913744 3.224136 0.267647 0.297508