Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00304 ATGAATCTGAATCACGGCAAGGCATCGATGCCTACAGCCGTTTGTAGTGCTGCTCTTAAATCCGGCGAAGTTGTTTCCGACCAATTTCCGGCTGGTCTGCGAGTTCTGGTCGTCGATGACGATCCGACCTGCCTGAGAATCTTGGATAAGATGCTTCAATTTTGTCTCTACCACGTTTCTATGTGCAATCGAGCCGAGACTGCGTTGTCTAAGCTTCGAGATAACAAAAATGGATTCGATATCGTAATTAGTGATGTCCATATGCCGGACATGGATGGATTTAAGCTCTTAGAGCACATTGGCCTAGAAATGGACCTACCAGTTATCATGATGTCTGCCGATGAAAGCAAAGATGTTGTCATGAAGGGAGTTACTCACGGAGCTTGCGATTATTTAATAAAACCTGTTCGAATTGAAGCTTTGAAGAACATATGGCAACATGTAGTTCGGAGGAGGAAGAATGAGTGGAAGGATCTAGAACAATCCGGAAGTGTGGAAGACGGGGATCGGCAACCAAAACTGTGCGATGACGCGGATTACTCGTCCTCGTTAAATGATGGAAGTTGCAAAAGCTCGAAGAGGAGGAAAGACGATGAAGAAGAAGCTGAGGAACGAGATGATTCGTCGACGTTGAAGAAGCCACGCGTGGTTTGGTCGGTCGAGCTTCATCAGCAGTTTGTCGCAGCTGTTAATCAACTCGGCATTGACAAGGCCGTTCCTAAGAAAATTTTGGAGCTGATGAATGTTCCGGGACTCACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGGTTGTATCTAAGAAGGCTAAGCGGAGTCGCACAATACCCTAGTAATTTGAACAATTCCTTCATCAACCCACAAGAAGCAATTTTCGGGCCAGTTTCAGCGTTCAACGAGATCAATCTTCAGGCTCTTGCCATGACAGGAAAACTCACACTCCAAAGTCTCGCCTCGCTTCAAGCTGCCGGCCTGAGTAGATCTTCTTCATCAAAATCCGGCGTAATTTCCGATCAACAGAAAATATTTAGTTTTGAGAATCCCAAACTGAGATTTGGTGAGGCCCAGCCTCAGCATCTCAACAGTAGTAAACCAATAAATTTACTGCATGGAATTCCCACCACCATGGAAGCAAAGCAGCTTGCAAATTTGAACCATGGAAGCATAAATATGCAAGGTAATATCCATGGAGGCCAAAACAACTCTTTATTAACCCAGATGACTCAACCTCAATCATCAATCAGACAGTCTGTTAGAATTCCAGGTGGGGTTCCGAAGAACAATTTGATTCCGCCAGAATCGTCTATCTTCAGTTTTCCGGCGAACCAAACAGCTGAATTCCCGGGAAATAATTTGCCTCTTCAAACGGCTCCATCTAAAGGGCCATTCTTGGAAGAATCAAATCTAGAAACAAAACAATCAGGAAGATTTGTATCAAATTATGATATATTAGATGATTTGCAGAATCCCAGTTTGAACTTCAATGCCTCTCAAGGCAACCTGAATATCTCATCTTCGGGTTTATATCATCAAAGCTTTCCCTCCGGCCAAAGGATCAGACAAGAAAGCGATGTTTCTACAGCTCGACCTGAGAACGGACAGATCATTAGACAGCAACTAAATTCTGTTCTTTTTGACAATCCGGTGAGGGTTAAAGCCGAGACAATCCCAGATCCAAGCTGCGTCTTATTCCCTGAAAACTTCATTCGGGACGATCTAATGAGTACCCTTTTCAGACAAGTTAGTTTCCTACAACTTTTCTTCTCTGTTTGTTTTCGATGA 1785 43.7 MNLNHGKASMPTAVCSAALKSGEVVSDQFPAGLRVLVVDDDPTCLRILDKMLQFCLYHVSMCNRAETALSKLRDNKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADESKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRRKNEWKDLEQSGSVEDGDRQPKLCDDADYSSSLNDGSCKSSKRRKDDEEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVAQYPSNLNNSFINPQEAIFGPVSAFNEINLQALAMTGKLTLQSLASLQAAGLSRSSSSKSGVISDQQKIFSFENPKLRFGEAQPQHLNSSKPINLLHGIPTTMEAKQLANLNHGSINMQGNIHGGQNNSLLTQMTQPQSSIRQSVRIPGGVPKNNLIPPESSIFSFPANQTAEFPGNNLPLQTAPSKGPFLEESNLETKQSGRFVSNYDILDDLQNPSLNFNASQGNLNISSSGLYHQSFPSGQRIRQESDVSTARPENGQIIRQQLNSVLFDNPVRVKAETIPDPSCVLFPENFIRDDLMSTLFRQVSFLQLFFSVCFR 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3176640 3179261 + Bda024739.1 Bda08g00304 11160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00304 594 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Bda08g00304 594 CDD REC_typeB_ARR-like 35 149 - -
Bda08g00304 594 MobiDBLite consensus disorder prediction 189 210 - -
Bda08g00304 594 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Bda08g00304 594 SMART REC_2 33 145 IPR001789 GO:0000160
Bda08g00304 594 Gene3D - 33 166 - -
Bda08g00304 594 SUPERFAMILY CheY-like 32 156 IPR011006 -
Bda08g00304 594 Gene3D - 210 272 - -
Bda08g00304 594 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 413 IPR045279 GO:0009736
Bda08g00304 594 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Bda08g00304 594 MobiDBLite consensus disorder prediction 156 210 - -
Bda08g00304 594 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Bda08g00304 594 MobiDBLite consensus disorder prediction 156 176 - -
Bda08g00304 594 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Bda08g00304 594 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 413 - -
Bda08g00304 594 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Bda08g00304 594 PIRSF RR_ARR_type-B 15 561 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01158 Bda08g00304 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01795 Bda-Chr1:54160869 Bda08g00304 Bda-Chr8:3176640 8.04E-127 dispersed
Bda07g01879 Bda-Chr7:36209687 Bda08g00304 Bda-Chr8:3176640 1.18E-49 dispersed
Bda08g00304 Bda-Chr8:3176640 Bda11g00187 Bda-Chr11:2406265 4.81E-132 dispersed
Bda03g00918 Bda-Chr3:8109038 Bda08g00304 Bda-Chr8:3176640 1.63E-44 transposed
Bda03g01158 Bda-Chr3:12761839 Bda08g00304 Bda-Chr8:3176640 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16251 PF00072 Response_reg 3.50E-22 CL0304 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00304 - K14491 tcc:18603588 691.804