Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00321 ATGGTGGCAGTTTCTCCGAATCCAGTTTATGGCGAAGTGATAAGCGGAGAGGTGGTCGACCTTCCAGTTATCGACCTTTCTGCAGAGAGATCAGAGGTGGCGAAGATGATAGTGAAGGCCTGCGAAGAGTACGGATTTTTCAAGGTCATCAACCATGGAGTTTCTGACGACGTAGTTGCCCAGCTCGAGGAAGAAAGCTTCAAGTTTTTTGCTAAACCACAGTCAGAAAAACAAGCAGCCGGGCCGGCGAATCCCTTTGGCTATGGCTGCAAAACCATCGGCTTCAATGGCGACGTCGGAGAAGTTGAATATCTTCTTTTCAACACAAATCCCCTCTCCATTTCTCAGATGTCCAAAACTATCTCCAACGACCCAGTAAAATTCAGCTCTGCTTTGAGTGGATATATAGAGGGAGTTGCGGGCTTAGCATGTGAGATATTGGATTTGATTGCAGAAGGGCTGTGGGTCCCAGACACTCAAGTTTTCAGCAGACTCATCAGAGACGTTGACAGTGACTCAGTTCTCAGGCTCAATCACTACCCTCCTGTGATCAAACGCTGCAGAGATAGGGACACGTCAGCCTCCGAAGTTGGGTTTGGAGAGCATTCTGACCCTCAGATCTTGACCCTACTTCGATCCAACGACGTGGGTGGCCTCCAGATCTCCACTCTCGATGGGGTGTGGGTCCCTGTCTCTCCTGACACAGCTGCCTTCTGTGTTAATGTTGGCGATGCGTTGCAGGCGATGACGAACGGGAGATTCGTGAGCGTGAGACATAGGGCCGTGACGAACGACCACAAGGCGAGGCTTTCGATTGCTTATTTCGGGGCACCGTCGCTGCAGCAGAGCATAACTGCGGTGCCGGAGGTGGCGGAGAGGAGGCCTTGTCTGTACCGGCCGTTCACTTGGGCGGAGTACAAGAAGACGACCTATTCACTAAGGCTGGGAGACACTAGGCTTTCACTTTTCAAAACTGGGTCTTAA 984 51.32 MVAVSPNPVYGEVISGEVVDLPVIDLSAERSEVAKMIVKACEEYGFFKVINHGVSDDVVAQLEEESFKFFAKPQSEKQAAGPANPFGYGCKTIGFNGDVGEVEYLLFNTNPLSISQMSKTISNDPVKFSSALSGYIEGVAGLACEILDLIAEGLWVPDTQVFSRLIRDVDSDSVLRLNHYPPVIKRCRDRDTSASEVGFGEHSDPQILTLLRSNDVGGLQISTLDGVWVPVSPDTAAFCVNVGDALQAMTNGRFVSVRHRAVTNDHKARLSIAYFGAPSLQQSITAVPEVAERRPCLYRPFTWAEYKKTTYSLRLGDTRLSLFKTGS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3336324 3339148 - Bda024760.1 Bda08g00321 11177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00321 327 PRINTS Isopenicillin N synthase signature 238 264 - -
Bda08g00321 327 PRINTS Isopenicillin N synthase signature 37 54 - -
Bda08g00321 327 PRINTS Isopenicillin N synthase signature 202 223 - -
Bda08g00321 327 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 278 IPR005123 -
Bda08g00321 327 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 325 - -
Bda08g00321 327 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 18 325 - -
Bda08g00321 327 SUPERFAMILY Clavaminate synthase-like 13 317 - -
Bda08g00321 327 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 88 IPR026992 -
Bda08g00321 327 Gene3D - 9 314 IPR027443 -
Bda08g00321 327 Pfam 2OG-Fe(II) oxygenase superfamily 172 276 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00321 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - tcc:18603710 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00409 Bda-Chr5:49534053 Bda08g00321 Bda-Chr8:3336324 7.27E-120 dispersed
Bda08g00321 Bda-Chr8:3336324 Bda12g00785 Bda-Chr12:36774203 1.27E-100 dispersed
Bda08g00321 Bda-Chr8:3336324 Bda03g00820 Bda-Chr3:6960904 4.33E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g30 Blo01g00042 . . Bda08g00321 . . . Bma05g01009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001435 2 2 2 2 3 2 3 2 2 2 2 2 3 2 2 3 2 6 3 2 2 2 2 3 4 2 2 2 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00321 Bda_Chr08 FPKM 3.562409 3.766323 5.51182 4.673778 5.070049 4.515516 5.795537 12.144003 10.860389