Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda08g00324 | ATGATCAACAAGCTCGGTCGCCAAGGCGAAATGCATGGCGTGCAATATCTTTTCCAGCAAATGAAGCTAGAGGAGCTCGATTGTCCTGAGGATTTGTTCGTTTTTGTTTTGATTTGTTGTCGGAGGTCTGGTTCTGCGGAGCAGGCGTTGAAGATGTTCTGTAGGATCAGCGAATTCGGGTGTAAGCCGACTGTGAAGATTTACAATCATCTTTTCGATGCATTGCTGAGTGAAAACAGGTTTAATATGATTAACCCTATCTATAGAAATATGAAGGTAGATGGACTTGAACCAAATGTTTTCACTTATAATTTACTTCTCAAGGCGTTGTGTATGAATGATAGAGTCGATGCTGCTTATAAGCTGCTTGAGGAAATGTCTAAGAAGGGCGTTTCCCCTGATTCTGTGAGCTATACGACTATAACCTCTTCTTTGTGTAAGATTGGTAAATCTGAAGATGCAAGAGAACTTGCCAGAGGTTTTGATCCGATTGTGCCTGTTTATAATGCTTTGATTTGTGGGATGTGCAAAGAAGGTAAAATTCAGATAGCATTTGAATTGTTTGGAGAAATGATGGGTAAGGGAATCGAACCAGACGTCATCACGTATTCTACACTAATTAATTTTCTTTCTGGCTTGGGGAATGTTGAGCTGGCTCTTGCTGTTTTAGCTCAGATGCTTCTAAGAGGCCTTAGCCCTAATATTCAAACCTTCACACCACTGATGAAAGGATATTTCTTGAGAGGAAGATCTCGTGAAGCTCTTGGGTTGTGGAAAAAGATTATTGAAGAGGGGGTCGAGCCCAATGTGATTGCCTATAACATTTTGATACATGGTTTTTGCTCCAATGGGTATTTAGTCGAAGCTGTATCTGCTTATGACGAAATGGAGATGAATGGGTGTGCTCCAAATGTGACAACATATGCCACTCTTATCGACGGATTTGGAAAAGCAGGTAACTTGATTGGTGCGTCCAATACTTGGAATAAGATGATATTCAATGAATGCCGCCCAAATGTGGTGGCATACACTTGTATGGTTGATGTCCTTTGTAAAAGTTTGATGTTCAATAAAGCTCTCTCTCTCATAGAGAAAATGTCTCTTGATGGTTGTCCACCAAATATAGTTACCTTCAACACAATTATCAAAGGCTTATGTGAAAATGGAAGGATAGAATTTGCAGTCGAATTGCTAGATTGGATGCCAATACATGGCTGTTTTCCCAATGTGACGACTTATAATGAACTGTTGGATGGTCTCTTCAAAGGTAACAAGTTTAAAGAAGCTTTTGGTCTTGTCGGAGAAATAGAAGATAGAGGTATTCAGCCAAATTTAGTGACATATAATACAATATTAAATGGGTTTTCCCGTGCTTATGAGCTCAACGAGACTTTGAAAATTGTCAGTAAGATGCTTGTGAGAGGAATAAAACCCGATCAAGTAACATATAATTCGCTAATATATGCATACTGCAAGAAGGGAAGGGTAGAAACTGCGATGCAGTTTATGGAGCAAATCAGTGATGTGGAGAATTGGTGTCCTGATATTATAACGTATACAAATCTTATTTGGGGAAGTTGCAGCTGGATCGGCATAGAAGAGGCTTTTAAATATCTTCATAATATGATGAATCAGGGGATCTTCCCCAACATTGCCACTTGGAGCGTGCTGATTCGTTGTTTAGTTAACTCTTTCGATCACATGGGTCCGATTCACATTGTGGATGAAATCCTTAAATAA | 1740 | 39.54 | MINKLGRQGEMHGVQYLFQQMKLEELDCPEDLFVFVLICCRRSGSAEQALKMFCRISEFGCKPTVKIYNHLFDALLSENRFNMINPIYRNMKVDGLEPNVFTYNLLLKALCMNDRVDAAYKLLEEMSKKGVSPDSVSYTTITSSLCKIGKSEDARELARGFDPIVPVYNALICGMCKEGKIQIAFELFGEMMGKGIEPDVITYSTLINFLSGLGNVELALAVLAQMLLRGLSPNIQTFTPLMKGYFLRGRSREALGLWKKIIEEGVEPNVIAYNILIHGFCSNGYLVEAVSAYDEMEMNGCAPNVTTYATLIDGFGKAGNLIGASNTWNKMIFNECRPNVVAYTCMVDVLCKSLMFNKALSLIEKMSLDGCPPNIVTFNTIIKGLCENGRIEFAVELLDWMPIHGCFPNVTTYNELLDGLFKGNKFKEAFGLVGEIEDRGIQPNLVTYNTILNGFSRAYELNETLKIVSKMLVRGIKPDQVTYNSLIYAYCKKGRVETAMQFMEQISDVENWCPDIITYTNLIWGSCSWIGIEEAFKYLHNMMNQGIFPNIATWSVLIRCLVNSFDHMGPIHIVDEILK | 579 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3353737 | 3355476 | - | Bda024763.1 | Bda08g00324 | 11180 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda08g00324 | 579 | Gene3D | Tetratricopeptide repeat domain | 402 | 469 | IPR011990 | GO:0005515 | |
| Bda08g00324 | 579 | Gene3D | Tetratricopeptide repeat domain | 326 | 401 | IPR011990 | GO:0005515 | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 339 | 373 | IPR002885 | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 199 | 233 | IPR002885 | - | |
| Bda08g00324 | 579 | Pfam | PPR repeat | 237 | 266 | IPR002885 | - | |
| Bda08g00324 | 579 | Pfam | PPR repeat family | 166 | 209 | IPR002885 | - | |
| Bda08g00324 | 579 | Pfam | PPR repeat family | 373 | 422 | IPR002885 | - | |
| Bda08g00324 | 579 | Pfam | PPR repeat family | 268 | 316 | IPR002885 | - | |
| Bda08g00324 | 579 | Pfam | PPR repeat family | 98 | 147 | IPR002885 | - | |
| Bda08g00324 | 579 | Pfam | PPR repeat family | 514 | 562 | IPR002885 | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 444 | 478 | IPR002885 | - | |
| Bda08g00324 | 579 | SUPERFAMILY | TPR-like | 98 | 510 | IPR011990 | GO:0005515 | |
| Bda08g00324 | 579 | Pfam | PPR repeat | 474 | 505 | IPR002885 | - | |
| Bda08g00324 | 579 | Pfam | PPR repeat | 439 | 471 | IPR002885 | - | |
| Bda08g00324 | 579 | Pfam | PPR repeat | 335 | 367 | IPR002885 | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 234 | 268 | IPR002885 | - | |
| Bda08g00324 | 579 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 1 | 567 | - | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 409 | 443 | IPR002885 | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 374 | 408 | IPR002885 | - | |
| Bda08g00324 | 579 | Gene3D | Tetratricopeptide repeat domain | 1 | 156 | IPR011990 | GO:0005515 | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 164 | 198 | IPR002885 | - | |
| Bda08g00324 | 579 | Gene3D | Tetratricopeptide repeat domain | 245 | 322 | IPR011990 | GO:0005515 | |
| Bda08g00324 | 579 | Gene3D | Tetratricopeptide repeat domain | 157 | 244 | IPR011990 | GO:0005515 | |
| Bda08g00324 | 579 | Gene3D | Tetratricopeptide repeat domain | 470 | 568 | IPR011990 | GO:0005515 | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 269 | 303 | IPR002885 | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 99 | 133 | IPR002885 | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 479 | 509 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 101 | 135 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 201 | 235 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 272 | 305 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 412 | 444 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 167 | 200 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 481 | 515 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 446 | 479 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 36 | 65 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 307 | 340 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 376 | 410 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 237 | 270 | IPR002885 | - | |
| Bda08g00324 | 579 | TIGRFAM | PPR: pentatricopeptide repeat domain | 341 | 375 | IPR002885 | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 515 | 549 | IPR002885 | - | |
| Bda08g00324 | 579 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 304 | 338 | IPR002885 | - | |
| Bda08g00324 | 579 | PANTHER | OS05G0132000 PROTEIN | 1 | 567 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda08g00324 | - | - | - | pavi:110752064 | 779.245 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00304 | Bda-Chr1:27969136 | Bda08g00324 | Bda-Chr8:3353737 | 4.43E-28 | dispersed | |
| Bda08g00324 | Bda-Chr8:3353737 | Bda07g00761 | Bda-Chr7:9033063 | 8.85E-49 | dispersed | |
| Bda11g01696 | Bda-Chr11:51116326 | Bda08g00324 | Bda-Chr8:3353737 | 5.33E-07 | dispersed | |
| Bda12g00641 | Bda-Chr12:30633847 | Bda08g00324 | Bda-Chr8:3353737 | 1.26E-22 | dispersed | |
| Bda11g00511 | Bda-Chr11:5408256 | Bda08g00324 | Bda-Chr8:3353737 | 2.96E-06 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g36 | . | . | . | Bda08g00324 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Csa06g01856 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0008622 | 1 | 3 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 31 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bda08g00324 | Bda_Chr08 | FPKM | 2.348066 | 2.059556 | 2.434348 | 3.219807 | 3.809462 | 5.37527 | 4.087232 | 5.308251 | 4.116625 |