Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00333 ATGGACCTTGTGAAATGTGATGGGGCAGCACTCTACTACCAGGGAAAATATTACCCATTGGGTGTGACCCCCACTGAATCCCAGATTAGGGACATTGTGGAGTGGTTGTTGGCTTTCCATGCAGATTCGACAGGATTAAGCACAGATAGCTTGGCTGATGCTGGCTACCCTGGAGCAGCATCACTGGGTGATGAGGTTTGTGGAATGGCAGTTGCTTATATAACTCAAAGAGATTTTTTATTCTGGTTTCGATCCCATACTGCGAAAGAGGTCAAGTGGGGTGGCGCAAAGCATCATCCAGATGACAAAGATGATGGTCAGAGAATGCATCCTCGTTCATCTTTCAAGGCATTCTTAGAAGTGGTGAAAAGTCGTAGTTTGCCTTGGGAGAACCCGGAAATGGATGCAATTCATTCTTTGCAGCTTATCTTAAGAGACTCATTTCGACTTGCAGAGGATAATTCTAAGGCGGTGATACATTCCGAGCTTGAGGATCATGAGATTCAATGTATGGATGAGCTCAGCTCAGTTGCCAGAGAAATGGTTAGATTGATAGAGACGGCAACTGCTCCAATATTTGCTGTGGATGTGGGGGGTTGCATAAATGGATGGAATGGGAAGATTGCAGAGTTAACTAGACTACCAGTTGAAGAAGCCATGGGGAAATCCTTGGTTTATGATCTTGTTTATAAGGAATCTGAACAAACTGTCGATAAGCTTCTCTATCGTGCTTTAAGAGGGGAAGAAGATAAAAATGTAGAGATAAAATTAAAGACATTTGGGTTAGAAGATGATAAAAAGCCGTTGTTTGTAGTGGTTAATGCTTGCTCTAGCAAGGATTACAAAAACAATATTGTTGGAGTTTGTTTTGTTGGCCATGATGTTACTATCCAAAAAGTTGTAATGGACAAGTTCATCCATATACAAGGTGATTACAAGGCCATTGTACATAGTCCTAGTCCACTAATCCCTCCCATATTTGCATCAGATGATAATACATGTTGCTCAGAGTGGAATACAGCTATGGAAAAACTAACGGGATGGTCTAGAGGAGACGTTATCGGAAAAATGTTGGTTGGGGAGGTTTTTGGCAATTGTTGTAGGCTCAAGGGTCCAGATGCGTTGACAAAATTTATGATTGTTTTGCACAATGCTATTGGAGGCGAGGACACAAATAAGTTTTCATTTTCTTTTTTTGACCGCAATAGGAAATATGTGCAAGCTCTACTTACAGCGAACAAGAGGGTGAATATGGATGGTCAGGTCATCGGGGCCTTCTGTTTCTTGCAGATTGCTAGTCCTGAGTTGCAACAAGCTCTTAAAGTTCAGAGCCAACAGGAGAAAAAGCGGTCTGTGAGGATGAAAGAGTTGGCTTACATTTGCCAGGAAATAAAGAATCCTCTGAGTGGAATAAGGTTTACCAACTCGCTTTTGGAGGGCACAACATTAACTGAAGATCAGAAGCAATTTCTTGAAACTAGTGCTGCTTGTGAGAGGCAGATTTTAAAGATAATTGAAGATATTGATTTGGAAACAATTGAAGATGGTTCTTTGGAGCTTGAGAAGGCCGAGTTCTTTTTGGGGAGTGTCATCAATGCTGTTGTTAGCCAAATAATGATATTGTTGAGAGAGAAAAATTTACAGTTGATTCGAGATATACCAGAAGAAGTTAAAACTTTATCAGTCTGTGGAGATCAAGTGAGAATTCAACAGGTCTTGGCCGATTTCTTGTTGAACATGGTGCGATATGCTCCATCTCCAGAAGGATGGGTTGGAATTCACGTGCGGCCAAGCATAAACAAAGTTTCTGAAAGTATCACTCTTGTGCGTATCGAATTCAGGATGGTATGCCCCGGCGAGGGTCTTCCCCCTGATTTAGTTCACGACATGTTCAATAGCAGTCAATGGATGACCAAAGAAGGCCTCGGGCTGAGCATGTGTCGAAAGATTCTGAAGCTCATGAACGGTGAAGTCCAGTACATCAGAGAGTCAGAAAGATGCTATTTCTTAACTATTATTGATCTTCCGACCAGTGAACAACATCAACTAGGATATTAA 2058 41.74 MDLVKCDGAALYYQGKYYPLGVTPTESQIRDIVEWLLAFHADSTGLSTDSLADAGYPGAASLGDEVCGMAVAYITQRDFLFWFRSHTAKEVKWGGAKHHPDDKDDGQRMHPRSSFKAFLEVVKSRSLPWENPEMDAIHSLQLILRDSFRLAEDNSKAVIHSELEDHEIQCMDELSSVAREMVRLIETATAPIFAVDVGGCINGWNGKIAELTRLPVEEAMGKSLVYDLVYKESEQTVDKLLYRALRGEEDKNVEIKLKTFGLEDDKKPLFVVVNACSSKDYKNNIVGVCFVGHDVTIQKVVMDKFIHIQGDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMEKLTGWSRGDVIGKMLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGEDTNKFSFSFFDRNRKYVQALLTANKRVNMDGQVIGAFCFLQIASPELQQALKVQSQQEKKRSVRMKELAYICQEIKNPLSGIRFTNSLLEGTTLTEDQKQFLETSAACERQILKIIEDIDLETIEDGSLELEKAEFFLGSVINAVVSQIMILLREKNLQLIRDIPEEVKTLSVCGDQVRIQQVLADFLLNMVRYAPSPEGWVGIHVRPSINKVSESITLVRIEFRMVCPGEGLPPDLVHDMFNSSQWMTKEGLGLSMCRKILKLMNGEVQYIRESERCYFLTIIDLPTSEQHQLGY 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3416139 3419344 - Bda024771.1 Bda08g00333 11189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00333 685 Pfam His Kinase A (phospho-acceptor) domain 457 516 IPR003661 GO:0000155|GO:0007165
Bda08g00333 685 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 443 508 IPR036097 GO:0000155|GO:0007165
Bda08g00333 685 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 564 666 IPR003594 -
Bda08g00333 685 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 527 676 IPR036890 -
Bda08g00333 685 SMART HisKA_10 452 516 IPR003661 GO:0000155|GO:0007165
Bda08g00333 685 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 679 - -
Bda08g00333 685 Gene3D PAS domain 175 299 - -
Bda08g00333 685 Gene3D - 433 515 - -
Bda08g00333 685 Gene3D - 516 680 IPR036890 -
Bda08g00333 685 PANTHER PHYTOCHROME 1 679 - -
Bda08g00333 685 CDD HisKA 453 508 IPR003661 GO:0000155|GO:0007165
Bda08g00333 685 PRINTS Phytochrome signature 273 290 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 111 129 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 293 313 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 199 214 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 180 196 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 78 97 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 ProSiteProfiles Histidine kinase domain profile. 459 679 IPR005467 -
Bda08g00333 685 SMART HKATPase_4 564 679 IPR003594 -
Bda08g00333 685 Pfam PAS fold 311 430 IPR013767 GO:0006355
Bda08g00333 685 Pfam PAS fold 180 295 IPR013767 GO:0006355
Bda08g00333 685 SUPERFAMILY PYP-like sensor domain (PAS domain) 182 291 IPR035965 -
Bda08g00333 685 SUPERFAMILY PYP-like sensor domain (PAS domain) 325 428 IPR035965 -
Bda08g00333 685 CDD PAS 322 430 IPR000014 -
Bda08g00333 685 ProSiteProfiles PAS repeat profile. 311 363 IPR000014 -
Bda08g00333 685 Gene3D - 1 141 IPR043150 -
Bda08g00333 685 Gene3D PAS domain 324 432 - -
Bda08g00333 685 ProSiteProfiles PAS repeat profile. 177 248 IPR000014 -
Bda08g00333 685 Pfam Phytochrome region 1 148 IPR013515 GO:0006355|GO:0009584
Bda08g00333 685 SMART pas_2 310 380 IPR000014 -
Bda08g00333 685 SMART pas_2 179 246 IPR000014 -
Bda08g00333 685 Gene3D - 88 124 IPR029016 -
Bda08g00333 685 CDD HATPase_Phy-like 564 675 IPR044767 -
Bda08g00333 685 SUPERFAMILY GAF domain-like 1 148 - -
Bda08g00333 685 CDD PAS 188 295 IPR000014 -
Bda08g00333 685 TIGRFAM sensory_box: PAS domain S-box protein 184 297 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00333 K12121 PHYB; phytochrome B - zju:107418995 1170.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00333 Bda11g00500 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00333 Bda-Chr8:3416139 Bda01g01884 Bda-Chr1:55014503 7.86E-13 dispersed
Bda11g00500 Bda-Chr11:5316805 Bda08g00333 Bda-Chr8:3416139 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01830 . 533 1712 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1443.7
Bda14g00969 . 504 1648 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1357.0
Bda13g00598 . 305 1278 Histidine Kinase Gene Family AT2G01830 51.7 1.5e-270 929.5
Bda06g00425 . 197 1076 Histidine Kinase Gene Family AT2G01830 53.3 6.4e-250 860.9
Bda01g00649 . 1 1022 Histidine Kinase Gene Family AT5G10720 54.8 3.5e-284 974.5
Bda01g01665 . 2 1120 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1753.0
Bda06g00414 . 12 1121 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1250.7
Bda11g00500 CCT 29 1120 Histidine Kinase Gene Family AT1G09570 53.0 0.0e+00 1164.1
Bda01g00824 . 36 875 Histidine Kinase Gene Family AT1G09570 54.3 2.6e-265 912.1
Bda08g00333 CCT 1 680 Histidine Kinase Gene Family AT1G09570 52.1 6.9e-202 701.4
Bda11g00500 CCT 30 1061 Histidine Kinase Gene Family AT2G18790 76.6 0.0e+00 1604.0
Bda07g00948 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1223.8
Bda01g00824 . 15 877 Histidine Kinase Gene Family AT2G18790 66.0 0.0e+00 1152.9
Bda06g00414 . 23 1076 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1114.8
Bda01g01665 . 22 1055 Histidine Kinase Gene Family AT2G18790 51.0 1.0e-306 1049.7
Bda08g00333 CCT 1 616 Histidine Kinase Gene Family AT2G18790 73.8 3.0e-269 925.2
Bda06g00414 . 10 1119 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1400.6
Bda11g00500 CCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1123.6
Bda01g01665 . 10 1115 Histidine Kinase Gene Family AT5G35840 50.5 0.0e+00 1103.6
Bda01g00824 . 40 871 Histidine Kinase Gene Family AT5G35840 52.1 1.1e-255 880.2
Bda11g00500 CCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1639.0
Bda07g00948 . 36 1107 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1250.0
Bda06g00414 . 24 1118 Histidine Kinase Gene Family AT4G16250 52.2 0.0e+00 1135.6
Bda01g00824 . 35 875 Histidine Kinase Gene Family AT4G16250 64.7 0.0e+00 1115.9
Bda08g00333 CCT 1 676 Histidine Kinase Gene Family AT4G16250 71.4 7.2e-287 983.8
Bda07g00948 . 14 1108 Histidine Kinase Gene Family AT4G18130 60.6 0.0e+00 1332.0
Bda11g00500 CCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1252.7
Bda01g00824 . 14 871 Histidine Kinase Gene Family AT4G18130 68.5 0.0e+00 1168.7
Bda08g00333 CCT 1 677 Histidine Kinase Gene Family AT4G18130 54.3 1.6e-211 733.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00333 Bda_Chr08 FPKM 3.482456 0.0 0.0 0.0 1.46697 4.119368 0.0 0.0 0.0