Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00333 ATGGACCTTGTGAAATGTGATGGGGCAGCACTCTACTACCAGGGAAAATATTACCCATTGGGTGTGACCCCCACTGAATCCCAGATTAGGGACATTGTGGAGTGGTTGTTGGCTTTCCATGCAGATTCGACAGGATTAAGCACAGATAGCTTGGCTGATGCTGGCTACCCTGGAGCAGCATCACTGGGTGATGAGGTTTGTGGAATGGCAGTTGCTTATATAACTCAAAGAGATTTTTTATTCTGGTTTCGATCCCATACTGCGAAAGAGGTCAAGTGGGGTGGCGCAAAGCATCATCCAGATGACAAAGATGATGGTCAGAGAATGCATCCTCGTTCATCTTTCAAGGCATTCTTAGAAGTGGTGAAAAGTCGTAGTTTGCCTTGGGAGAACCCGGAAATGGATGCAATTCATTCTTTGCAGCTTATCTTAAGAGACTCATTTCGACTTGCAGAGGATAATTCTAAGGCGGTGATACATTCCGAGCTTGAGGATCATGAGATTCAATGTATGGATGAGCTCAGCTCAGTTGCCAGAGAAATGGTTAGATTGATAGAGACGGCAACTGCTCCAATATTTGCTGTGGATGTGGGGGGTTGCATAAATGGATGGAATGGGAAGATTGCAGAGTTAACTAGACTACCAGTTGAAGAAGCCATGGGGAAATCCTTGGTTTATGATCTTGTTTATAAGGAATCTGAACAAACTGTCGATAAGCTTCTCTATCGTGCTTTAAGAGGGGAAGAAGATAAAAATGTAGAGATAAAATTAAAGACATTTGGGTTAGAAGATGATAAAAAGCCGTTGTTTGTAGTGGTTAATGCTTGCTCTAGCAAGGATTACAAAAACAATATTGTTGGAGTTTGTTTTGTTGGCCATGATGTTACTATCCAAAAAGTTGTAATGGACAAGTTCATCCATATACAAGGTGATTACAAGGCCATTGTACATAGTCCTAGTCCACTAATCCCTCCCATATTTGCATCAGATGATAATACATGTTGCTCAGAGTGGAATACAGCTATGGAAAAACTAACGGGATGGTCTAGAGGAGACGTTATCGGAAAAATGTTGGTTGGGGAGGTTTTTGGCAATTGTTGTAGGCTCAAGGGTCCAGATGCGTTGACAAAATTTATGATTGTTTTGCACAATGCTATTGGAGGCGAGGACACAAATAAGTTTTCATTTTCTTTTTTTGACCGCAATAGGAAATATGTGCAAGCTCTACTTACAGCGAACAAGAGGGTGAATATGGATGGTCAGGTCATCGGGGCCTTCTGTTTCTTGCAGATTGCTAGTCCTGAGTTGCAACAAGCTCTTAAAGTTCAGAGCCAACAGGAGAAAAAGCGGTCTGTGAGGATGAAAGAGTTGGCTTACATTTGCCAGGAAATAAAGAATCCTCTGAGTGGAATAAGGTTTACCAACTCGCTTTTGGAGGGCACAACATTAACTGAAGATCAGAAGCAATTTCTTGAAACTAGTGCTGCTTGTGAGAGGCAGATTTTAAAGATAATTGAAGATATTGATTTGGAAACAATTGAAGATGGTTCTTTGGAGCTTGAGAAGGCCGAGTTCTTTTTGGGGAGTGTCATCAATGCTGTTGTTAGCCAAATAATGATATTGTTGAGAGAGAAAAATTTACAGTTGATTCGAGATATACCAGAAGAAGTTAAAACTTTATCAGTCTGTGGAGATCAAGTGAGAATTCAACAGGTCTTGGCCGATTTCTTGTTGAACATGGTGCGATATGCTCCATCTCCAGAAGGATGGGTTGGAATTCACGTGCGGCCAAGCATAAACAAAGTTTCTGAAAGTATCACTCTTGTGCGTATCGAATTCAGGATGGTATGCCCCGGCGAGGGTCTTCCCCCTGATTTAGTTCACGACATGTTCAATAGCAGTCAATGGATGACCAAAGAAGGCCTCGGGCTGAGCATGTGTCGAAAGATTCTGAAGCTCATGAACGGTGAAGTCCAGTACATCAGAGAGTCAGAAAGATGCTATTTCTTAACTATTATTGATCTTCCGACCAGTGAACAACATCAACTAGGATATTAA 2058 41.74 MDLVKCDGAALYYQGKYYPLGVTPTESQIRDIVEWLLAFHADSTGLSTDSLADAGYPGAASLGDEVCGMAVAYITQRDFLFWFRSHTAKEVKWGGAKHHPDDKDDGQRMHPRSSFKAFLEVVKSRSLPWENPEMDAIHSLQLILRDSFRLAEDNSKAVIHSELEDHEIQCMDELSSVAREMVRLIETATAPIFAVDVGGCINGWNGKIAELTRLPVEEAMGKSLVYDLVYKESEQTVDKLLYRALRGEEDKNVEIKLKTFGLEDDKKPLFVVVNACSSKDYKNNIVGVCFVGHDVTIQKVVMDKFIHIQGDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMEKLTGWSRGDVIGKMLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGEDTNKFSFSFFDRNRKYVQALLTANKRVNMDGQVIGAFCFLQIASPELQQALKVQSQQEKKRSVRMKELAYICQEIKNPLSGIRFTNSLLEGTTLTEDQKQFLETSAACERQILKIIEDIDLETIEDGSLELEKAEFFLGSVINAVVSQIMILLREKNLQLIRDIPEEVKTLSVCGDQVRIQQVLADFLLNMVRYAPSPEGWVGIHVRPSINKVSESITLVRIEFRMVCPGEGLPPDLVHDMFNSSQWMTKEGLGLSMCRKILKLMNGEVQYIRESERCYFLTIIDLPTSEQHQLGY 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3416139 3419344 - Bda024771.1 Bda08g00333 11189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00333 685 Pfam His Kinase A (phospho-acceptor) domain 457 516 IPR003661 GO:0000155|GO:0007165
Bda08g00333 685 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 443 508 IPR036097 GO:0000155|GO:0007165
Bda08g00333 685 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 564 666 IPR003594 -
Bda08g00333 685 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 527 676 IPR036890 -
Bda08g00333 685 SMART HisKA_10 452 516 IPR003661 GO:0000155|GO:0007165
Bda08g00333 685 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 679 - -
Bda08g00333 685 Gene3D PAS domain 175 299 - -
Bda08g00333 685 Gene3D - 433 515 - -
Bda08g00333 685 Gene3D - 516 680 IPR036890 -
Bda08g00333 685 PANTHER PHYTOCHROME 1 679 - -
Bda08g00333 685 CDD HisKA 453 508 IPR003661 GO:0000155|GO:0007165
Bda08g00333 685 PRINTS Phytochrome signature 273 290 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 111 129 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 293 313 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 199 214 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 180 196 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 PRINTS Phytochrome signature 78 97 IPR001294 GO:0006355|GO:0009584
Bda08g00333 685 ProSiteProfiles Histidine kinase domain profile. 459 679 IPR005467 -
Bda08g00333 685 SMART HKATPase_4 564 679 IPR003594 -
Bda08g00333 685 Pfam PAS fold 311 430 IPR013767 GO:0006355
Bda08g00333 685 Pfam PAS fold 180 295 IPR013767 GO:0006355
Bda08g00333 685 SUPERFAMILY PYP-like sensor domain (PAS domain) 182 291 IPR035965 -
Bda08g00333 685 SUPERFAMILY PYP-like sensor domain (PAS domain) 325 428 IPR035965 -
Bda08g00333 685 CDD PAS 322 430 IPR000014 -
Bda08g00333 685 ProSiteProfiles PAS repeat profile. 311 363 IPR000014 -
Bda08g00333 685 Gene3D - 1 141 IPR043150 -
Bda08g00333 685 Gene3D PAS domain 324 432 - -
Bda08g00333 685 ProSiteProfiles PAS repeat profile. 177 248 IPR000014 -
Bda08g00333 685 Pfam Phytochrome region 1 148 IPR013515 GO:0006355|GO:0009584
Bda08g00333 685 SMART pas_2 310 380 IPR000014 -
Bda08g00333 685 SMART pas_2 179 246 IPR000014 -
Bda08g00333 685 Gene3D - 88 124 IPR029016 -
Bda08g00333 685 CDD HATPase_Phy-like 564 675 IPR044767 -
Bda08g00333 685 SUPERFAMILY GAF domain-like 1 148 - -
Bda08g00333 685 CDD PAS 188 295 IPR000014 -
Bda08g00333 685 TIGRFAM sensory_box: PAS domain S-box protein 184 297 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00333 Bda11g00500 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00333 Bda-Chr8:3416139 Bda01g01884 Bda-Chr1:55014503 7.86E-13 dispersed
Bda11g00500 Bda-Chr11:5316805 Bda08g00333 Bda-Chr8:3416139 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00333 K12121 - zju:107418995 1170.99