Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00354 ATGCCCGTTTCTGCCATTGTTGACCGTCGAGTTTTTTCTCATTCTCCGGCCAAATCCTCTACTTTCAGCTCTCCTGGACTCTCTCTCTCGCTTCAAACTAATTTGGAGGCGTCACCCAGAATGGCTGAAGCTTTCGAGCATAACCTTGGGAGAAGTAGAGAGAGATTAGAGCATGAAAGCAGATCCGGCAGTGATAACATGGATGGCGCCTCCGGCGACGAACAAGATGCCACCGGTGACAAGCCACCTAGAAAGAAACGTTACCACCGACACACTCCTCAGCAAATCCAAGAACTCGAACTAGTTTTCAAGGAGTGCCCTCATCCCGATGAGAAGCAAAGATTGGAGATTAGCCGGAGGCTATGTCTGGCAACCAGACAAGTTAAATTCTGGTTCCAAAATCGTCGAACCCAGATGAAGACTCAGTTGGAAAGGCACGAGAATACGCTGTTGAGGCAAGAAAACGACAAGCTCCGATCGGAGAACTTGTCTATCAGAGAGGCGATGAGGAACCCAATTTGCACCAACTGCGGTGGTCATGCGATGATTACTGAAATATCACTTGAAGAACAGCAACTGAGGATCGAAAACGCCCGATTGAAAGACGAGTTAGACCGTGTTTTCCTCCTCGCCGGAAAGTTTCTCGGTCGACCTGTTGCTACTCCACTTTCAGGCTCAAATTTAGAACTTGGGGTTGGAATGAACGGCTTTGGTGGCCTCCCTCTGCCTGCATCCATGACTCTTCCGCCGGAATTTACCATCGGAATTGCCGAAAATTCACATAGTTCTGTGGAGAGGTCCATGTTTCTAGAGCTAGCGTTGGGCGCCATGGATGAACTGGTGAAAATAGCGCAGATAGACGACCCTCTTTGGACCAGAAATTCAAAAATGGGAAGAGAAATTCTGAACCAGGAGGAGTATTTGAAAATATTATCTCCTTGCATTGGTTTAAAATCAAATGGTTTTGCAAGGGAAGCGTCGAGAGAGACTGGCATCGTTATGATTAACGCCATTGCTCTCGTCGAAACTCTGATGGATTCGAAACGTTTTGCGGAGATGTTTCCTTGTTTGATTGCTAGAACGAGCACGACGGATGTGATATCGAGCGGAGTGGGAGGAACACGAAATGGTGCATTGCAACTGATGCATGCTGAATTTCAAGTGCTGTCTCCATTGGTTCCGATTCGATCTGTTAGTTTCCTTCGCTTCTGCAAACAGCACGCCGAAGGGGTCTGGGCCGTTGTCGATGTCTCCATCGACACCATGAAAGAAGCTAACTCTAGGAGGCTTCCTTCTGGCTGTATTATCCAAGATATGCTAAATGGGTGCTCCAAGGTGACGTGGGTGGAGCATGCTGAGTACGACGAAAGCCAAGTCCACCACCTCTATCGCCCCCTCCTAAGCTCCGGCATCGGCTTCGGAGCTCGAAGATGGGTCGCCACCCTCCTACGCCAATGCCAATGTCTCGCCATCCTCGTGTCTTCCTCCCTTCACCCTCCCAACCACACTGCCATAACTCCGGCGGGTCACCGGAGCATGTTGAAGTTGGCCCTCAGGATGACCGAAAACTTCTGTGCTGGAGTGTGCGGATCGACGGTGCATGAATGGAACAAGCTTAACGCCGAAAACGCTACTAATGCCAATCAGAGCAGTATGCTAATACTTCAGGAGACATACATCGACGTTGCGGGATCATTAGTTGTGTACGCCCCGGTCGATGTTCCTACAATGCAAATTGTAATGAACGGTGGAGATTCAACCTACGTGACACTATTACCATCAGGATTCTCTGTAGTACCTGATGGACGAGAGTTGATTGGCAAGGCGAAGATGACCCAAGACTTATTTAACAGTGGTGGGAGTCTCCTCACTGTAGCCTTTCAAATCCTAGTGAACAACCTCCCAATGGCCAAGCTCTCGGTGGAGTCGGTGGAGACGATCAACAATCTCATCTCCTGTACCATCCAAAAGATCAAGGTTGCCCTTCAATGCGACAATTAA 2001 49.03 MPVSAIVDRRVFSHSPAKSSTFSSPGLSLSLQTNLEASPRMAEAFEHNLGRSRERLEHESRSGSDNMDGASGDEQDATGDKPPRKKRYHRHTPQQIQELELVFKECPHPDEKQRLEISRRLCLATRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRSENLSIREAMRNPICTNCGGHAMITEISLEEQQLRIENARLKDELDRVFLLAGKFLGRPVATPLSGSNLELGVGMNGFGGLPLPASMTLPPEFTIGIAENSHSSVERSMFLELALGAMDELVKIAQIDDPLWTRNSKMGREILNQEEYLKILSPCIGLKSNGFAREASRETGIVMINAIALVETLMDSKRFAEMFPCLIARTSTTDVISSGVGGTRNGALQLMHAEFQVLSPLVPIRSVSFLRFCKQHAEGVWAVVDVSIDTMKEANSRRLPSGCIIQDMLNGCSKVTWVEHAEYDESQVHHLYRPLLSSGIGFGARRWVATLLRQCQCLAILVSSSLHPPNHTAITPAGHRSMLKLALRMTENFCAGVCGSTVHEWNKLNAENATNANQSSMLILQETYIDVAGSLVVYAPVDVPTMQIVMNGGDSTYVTLLPSGFSVVPDGRELIGKAKMTQDLFNSGGSLLTVAFQILVNNLPMAKLSVESVETINNLISCTIQKIKVALQCDN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3621138 3625955 - Bda024793.1 Bda08g00354 11210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00354 666 CDD START_ArGLABRA2_like 266 487 - -
Bda08g00354 666 SUPERFAMILY Homeodomain-like 70 142 IPR009057 -
Bda08g00354 666 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Bda08g00354 666 MobiDBLite consensus disorder prediction 49 64 - -
Bda08g00354 666 SMART HOX_1 83 146 IPR001356 GO:0003677
Bda08g00354 666 Coils Coil 183 203 - -
Bda08g00354 666 ProSiteProfiles START domain profile. 262 491 IPR002913 GO:0008289
Bda08g00354 666 SUPERFAMILY Bet v1-like 265 488 - -
Bda08g00354 666 Coils Coil 136 171 - -
Bda08g00354 666 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Bda08g00354 666 SMART START_1 271 488 IPR002913 GO:0008289
Bda08g00354 666 CDD homeodomain 84 142 IPR001356 GO:0003677
Bda08g00354 666 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Bda08g00354 666 Gene3D - 71 158 - -
Bda08g00354 666 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 544 664 - -
Bda08g00354 666 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 35 543 - -
Bda08g00354 666 MobiDBLite consensus disorder prediction 49 92 - -
Bda08g00354 666 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 544 664 IPR042160 -
Bda08g00354 666 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 35 543 IPR042160 -
Bda08g00354 666 Pfam START domain 272 488 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00354 Bda11g00288 CCT
Bda08g00354 Bda13g00333 CCT
Bda08g00354 Bda11g00288 ECH
Bda08g00354 Bda13g00333 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00354 Bda-Chr8:3621138 Bda13g00333 Bda-Chr13:4230213 1.91E-44 dispersed
Bda08g00354 Bda-Chr8:3621138 Bda14g00713 Bda-Chr14:5378449 1.00E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16254 PF01852 START 2.80E-43 CL0209 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00354 K09338 - csv:101222248 786.178