Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00378 TTGACCATGGATAGTAGGGTTCAAGGAATGCTTGTTGGTTCGGAGATTCATGGATTTCATACATTGAAAGATTTGGATATGAGAAACATTATGGATGAAGCACAAATGAGATGGCTCCGGCCCAATGAAATTCATGCCATACTTTGTAATCACAGATACTTCAACATCAATGTCAAACCATTGAACTTGCCCCCGGTTTCCTTTCCGATCAAACTTTTTGTGTTATCTGCCTTTTTTTACAGATTACTTTCACTAACTGAAACAGGTGGTACTATAAAGTTATTTGATCGTAAGATGCTTAGGAACTTTAGGAAGGATGGTCATAACTGGAAAAAGAAAAAGGATGGGAAGACAGTCAAAGAAGCACATGAGCACCTAAAAGTTGGTAATGAAGAAAGGATTCATGTATATTATGCACATGGACAGGATGCTCCAACCTTTGTCCGTCGGTGCTATTGGCTTCTTGATAAGAGTCTAGAACACATAGTTCTTGTTCATTACCGTGAAACACAAGAGGTACATTTGCAGGGTTCTCCAGCCACCCCTGTGAATTCTAATTCTAGTTCTGTCTCCGACCATTCTGCCCCCTCGCGTTTATCAGAAGAACTTGATTCTGGGACTGACCAAACTCCTCAAGTTGGTGAAAGTGAATTTCTAGCAGAGCCTCAAAATAATTTAACTGTGAAGAATTATGAGCAAAGACTTCATGAGATTAACACGCTTGAATGGGATGAGCTTCTTGTAACAGATGATATTTCCAATACACCTAAAGGAGATGGCAAAGTCTGTTTTGACCAACAGAATCGAGTTGCAGTGAATGATTCCACAATTGGAGGAGGCAAGAATTTATTAGTGGAACGTTCTACATTTGACGATATAAGTGGTTCAACTGGGAGATATAACACAAGTTATTTGGGTTCACCAAACAGCAGCTACATATCTACAGCGGTTAGTCAATTGAATTCAAATGCACAGAAAGGGAATTTCATTGCAATGGCCTCCAATGATTCTTCGGGTATTGGGGTCCACGAGGGTTTGCAAAGTCAGGATAGTTTTGGGCGGTGGATAAATGAGATTATCTCTGACTCTCCTGGTTCAGTAGATGATTCAGCTTTTGAGTCCTCCATTTTACCTCATGAGGAATTTACCTCTGATATAGATCATCAACAATCTTCTATTCCAGAACAAATTTTTGACATAACTGATATCTCTCCTGGATGGGCATTTACGACAGAAAGAACCAAGATTTTGATAACTGGATTCTTTCATGACGAGTTTGCTCATCTGGCTAAATCCAGTTTGTTTTGTGTCTGCGGCGATGTTTGTATTCCTACAGAAGTTGTTCAACTTGGAGTATATCGGTGCCTGGTACCACCACATCCACCTGGCTTTGTAAATCTCTATCTCAGTTTAGATGGTCAAAAACCAATCAGCCAAGTTCTGAATTTTGAGTATCACAGCAAATTACTGGATGGTTCAGGAGTTTCTTTAGAAGAAAAAGACAGATGGAAGGAGTTCCAAGTACAGATGAGGCTTCTTGGCTTGCTTTTTTCTGCATCTAAGAGCCTGAGCATTCTATCTAGTAAAGCATCACCAACCGCGCTGAAGGTAGCGAAGAACTTTGCTCAAAAAACCTCTAACATTGCCAATAGTTGGGCTTACTTGCACAAGTCAATTCAAGATAATAAAATTTCATTTCCATCTGCGAAAGATGGATTGTTGGAAGTAATTTTAAAGAATAGAGTAAGGGAATGGCTATTAGAAAGAATTGTTGAAGGGTCCAAGAAGAGCACGGACTTTGATGCCCAAGGTCAAGGAGTAATTCACTTATGTGCCATTCTGGGATATTCATGGGCTATACAGTTATTTGCTTGGTCAGGTTTAACATTGGATTTTCGGGACAAATTTGGATGGACTGCTCTTCACTGGGCAGCATATTGCGGCAGGGAGAAAATGGTTGCAGTTCTTCTATATGCTGGAGCAAAGCCGAACTTGGTCACAGACCCAACCCCAGAAAATCCTGGGGGATGCACAGCTGCTGATCTTGCATCTTTCAAGGGTCATGACGGCTTGGCTGCCTATCTTTCAGAAAAGGCTTTAGTATCACATTTTCAGGAAATGAGTATAGCTGGGAATATCAGTGGTACACTGCGAACCAGCACAACTGAGAAGGAGAGTGCAAACTCTCAGAACCTCGGAGAGGAGCAACTATATGTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCGACCCCATTTTAAGGTTTTCTCCCAAGAGTTTCTTCTCTTCTTAA 2772 33.55 LTMDSRVQGMLVGSEIHGFHTLKDLDMRNIMDEAQMRWLRPNEIHAILCNHRYFNINVKPLNLPPVSFPIKLFVLSAFFYRLLSLTETGGTIKLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDAPTFVRRCYWLLDKSLEHIVLVHYRETQEVHLQGSPATPVNSNSSSVSDHSAPSRLSEELDSGTDQTPQVGESEFLAEPQNNLTVKNYEQRLHEINTLEWDELLVTDDISNTPKGDGKVCFDQQNRVAVNDSTIGGGKNLLVERSTFDDISGSTGRYNTSYLGSPNSSYISTAVSQLNSNAQKGNFIAMASNDSSGIGVHEGLQSQDSFGRWINEIISDSPGSVDDSAFESSILPHEEFTSDIDHQQSSIPEQIFDITDISPGWAFTTERTKILITGFFHDEFAHLAKSSLFCVCGDVCIPTEVVQLGVYRCLVPPHPPGFVNLYLSLDGQKPISQVLNFEYHSKLLDGSGVSLEEKDRWKEFQVQMRLLGLLFSASKSLSILSSKASPTALKVAKNFAQKTSNIANSWAYLHKSIQDNKISFPSAKDGLLEVILKNRVREWLLERIVEGSKKSTDFDAQGQGVIHLCAILGYSWAIQLFAWSGLTLDFRDKFGWTALHWAAYCGREKMVAVLLYAGAKPNLVTDPTPENPGGCTAADLASFKGHDGLAAYLSEKALVSHFQEMSIAGNISGTLRTSTTEKESANSQNLGEEQLYVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCDPILRFSPKSFFSS 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3870823 3878267 + Bda024820.1 Bda08g00378 11234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00378 923 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 741 - -
Bda08g00378 923 Gene3D Immunoglobulins 393 489 IPR013783 -
Bda08g00378 923 Pfam IPT/TIG domain 400 485 IPR002909 -
Bda08g00378 923 SUPERFAMILY Ankyrin repeat 600 698 IPR036770 -
Bda08g00378 923 Pfam CG-1 domain 89 169 IPR005559 GO:0003677
Bda08g00378 923 Gene3D - 567 705 IPR036770 -
Bda08g00378 923 ProSiteProfiles Ankyrin repeat region circular profile. 636 664 - -
Bda08g00378 923 SMART CG_1_2 30 171 IPR005559 GO:0003677
Bda08g00378 923 ProSiteProfiles Ankyrin repeat profile. 636 668 IPR002110 GO:0005515
Bda08g00378 923 SMART ANK_2a 675 704 IPR002110 GO:0005515
Bda08g00378 923 SMART ANK_2a 636 665 IPR002110 GO:0005515
Bda08g00378 923 ProSiteProfiles CG-1 DNA-binding domain profile. 27 176 IPR005559 GO:0003677
Bda08g00378 923 SUPERFAMILY E set domains 400 485 IPR014756 -
Bda08g00378 923 MobiDBLite consensus disorder prediction 176 218 - -
Bda08g00378 923 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 741 - -
Bda08g00378 923 Pfam Ankyrin repeats (3 copies) 584 665 IPR002110 GO:0005515
Bda08g00378 923 Coils Coil 739 740 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00378 K21596 CAMTA; calmodulin-binding transcription activator - jre:108994781 920.613
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01166 Bda08g00378 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01166 Bda-Chr3:13068235 Bda08g00378 Bda-Chr8:3870823 0 dispersed
Bda08g00378 Bda-Chr8:3870823 Bda15g00806 Bda-Chr15:12049284 2.17E-35 dispersed
Bda08g00378 Bda-Chr8:3870823 Bda03g01181 Bda-Chr3:13857554 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00806 . 1 1073 CAMTA Transcription Factor Family AT5G64220 51.9 6.8e-268 920.6
Bda03g01181 . 28 919 CAMTA Transcription Factor Family AT3G16940 53.7 7.4e-262 900.2
Bda03g01166 BCT 28 652 CAMTA Transcription Factor Family AT3G16940 54.8 1.6e-192 669.8
Bda03g01181 . 7 635 CAMTA Transcription Factor Family AT4G16150 55.7 4.2e-205 711.8
Bda08g00378 BCT 9 660 CAMTA Transcription Factor Family AT4G16150 53.6 1.1e-200 697.2
Bda03g01166 BCT 49 377 CAMTA Transcription Factor Family AT4G16150 53.5 5.8e-106 382.5
Bda15g00806 . 1 1073 CAMTA Transcription Factor Family AT5G64220 51.9 6.8e-268 920.6
Bda03g01181 . 7 635 CAMTA Transcription Factor Family AT4G16150 55.7 4.2e-205 711.8
Bda08g00378 BCT 9 660 CAMTA Transcription Factor Family AT4G16150 53.6 1.1e-200 697.2
Bda03g01166 BCT 49 377 CAMTA Transcription Factor Family AT4G16150 53.5 5.8e-106 382.5
Bda03g01181 . 28 919 CAMTA Transcription Factor Family AT3G16940 53.7 7.4e-262 900.2
Bda03g01166 BCT 28 652 CAMTA Transcription Factor Family AT3G16940 54.8 1.6e-192 669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00378 Bda_Chr08 FPKM 2.941888 3.296788 0.0 0.0 3.305943 2.233125 2.760852 0.0 0.0