Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00383 ATGCTGGTGTTTTGCATATGTGGGATCATAGCAAGCACGGCGCTGGGTAAAGGAGAAGACCATCTTTTAGAATATGCTGTCACGGCTGGTTTGACTGTAGTCGTTGTGATTTTCTCAATCGGACCAATCTCCGGCGCTCATATTAACCCTGCTGTGACTCTGGCCTTCGCCATTTTTGGTTATTTTCCGTGGTCTAAGGTTTCGCCATACATTATAGCTCAAACATTGGGATCAGTACTGGGAACGTACATTGGAAGCTGTGTTTATGGAGTAAAATCTGAACTTTTTAGGACAAGATCAGTTCATAACTCCATTTCTGCTTTCTGGGTAGAGCTCATTGCGACTTTTGTAATCCTCTTTCTCATCACTTCTTTGAATCATGAAGCACGAATTGTTGGCCACGTATCTGGTTTTGTTATCGGAATATCCATTGGGCTCGGCGTGTTAATCACAGGGCCAGTTTCAGGAGGATCAATGAACCCAGCAAGATCTTTAGGACCTGCAATTCTTTCATGGAGTTTTAGAGACATATGGGTTTACATTACTGCTCCTTTTCTTGGAGCGTTTCTTGGCTGTCTCTTGTCTCGTTATCTTCGTCTTCGCCCCCATCTGAACACCTCTCTCATCGGTTCGTTGGTCTTAAATGGCAGCTGA 654 44.19 MLVFCICGIIASTALGKGEDHLLEYAVTAGLTVVVVIFSIGPISGAHINPAVTLAFAIFGYFPWSKVSPYIIAQTLGSVLGTYIGSCVYGVKSELFRTRSVHNSISAFWVELIATFVILFLITSLNHEARIVGHVSGFVIGISIGLGVLITGPVSGGSMNPARSLGPAILSWSFRDIWVYITAPFLGAFLGCLLSRYLRLRPHLNTSLIGSLVLNGS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3967019 3967962 - Bda024826.1 Bda08g00383 11239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00383 217 PANTHER AQUAPORIN NIP7-1-RELATED 1 203 - -
Bda08g00383 217 PRINTS Major intrinsic protein family signature 66 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00383 217 PRINTS Major intrinsic protein family signature 110 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00383 217 PRINTS Major intrinsic protein family signature 141 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00383 217 PRINTS Major intrinsic protein family signature 178 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00383 217 PRINTS Major intrinsic protein family signature 29 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00383 217 ProSitePatterns MIP family signature. 47 55 IPR022357 -
Bda08g00383 217 Gene3D Glycerol uptake facilitator protein. 1 205 IPR023271 -
Bda08g00383 217 PANTHER AQUAPORIN NIP2-1 1 203 IPR034294 -
Bda08g00383 217 Pfam Major intrinsic protein 20 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00383 217 SUPERFAMILY Aquaporin-like 1 200 IPR023271 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00383 K09874 NIP; aquaporin NIP - zju:107423284 271.937
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00383 Bda09g00618 CCT
Bda07g00175 Bda08g00383 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00383 Bda-Chr8:3967019 Bda09g00618 Bda-Chr9:8973448 1.57E-43 dispersed
Bda08g00383 Bda-Chr8:3967019 Bda08g00385 Bda-Chr8:4013790 4.86E-150 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g300 . . . Bda08g00383 . . Bma07g01058 . . . Cma02g00971 Cma15g01348 Car02g00717 Car15g01216 . . Cpe05g00746 . . . . . . . . . . . . . . Cone8ag0521 . . . . Csa05g00129 Chy09g01364 . Blo03g00779 Blo19g00111 Bda07g00175 Bda09g00618 Bpe08g00926 . . . . Cmo02g00977 Cmo15g01411 . . . . . . Bhi12g00044 . . . . . . Cla01g00114 Cam01g0115 Cec01g0116 Cco01g0117 Clacu01g0113 Cmu01g0114 Cre09g2392 Lsi09g00102 . . Cme09g01911
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010672 2 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00383 Bda_Chr08 FPKM 33.353317 32.067322 39.525288 37.056786 33.646946 33.760094 31.115553 71.786873 70.105591