Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00390 ATGCATCCGGTAAATGTGGCAGTGGCGACTTGGATGCTTGCTCGGACGACGACGGCTACGGGAATGGAGTCCCAATTGGAAAGCGACATTTCCTTTGGGACGCCGTGGTGGTTCATTTACGCCGGGATCTGTTGCTGCCTCGTTCTATTCGCCGGAATGATGTCTGGTTTGACACTCGGCCTCATGTCTCTCAGCCGCGTCGACCTTGAAATTCTTCAGCGCAGCGGTACTCATTCCGAGAAAAAACAGGCTGCTACAATACTTCCAGTAGTTAAAAAGCAGCATCAGCTCCTTGTTACGTTGCTTTTGTGCAATGCTGCTGCCATGGAGGCTCTTCCTCTATATCTTGATAAACTCTTCAATCAATACATTGCTATAATTCTCTCTGTAACTTTTGTGTTAGCTTTTGGAGAAGTCATACCACAATCAATATGCACTAGATATGGACTTGCTGTAGGGGCGAGTTTGGTTTGGGTTGTCCGAATCTTGATGATCATATGCTATCCAATTGCCTATCCCATTGGGAAGATCCTGGACTGCTTGCTTGGACACGATGAGGCATTATTCAGGCGTGCTCAGTTAAAAGTTCTTGTCTCCATCCATAGCCAAGAGGCTGGAAAAGGGGGCGAGCTAACACATGATGAGACAACAATCATAAGTGGAGCTCTCGACTTGACTGAAAAGACTGCTGAGGAGGCTATGACACCAATTGAATCAACTTTTTCGTTGGATGTTAATTCGAAATTGGACTGGGAGGCAATGGGAAAAATTCTGGCTCGGGGTCATAGCCGAGTTCCTGTGTATTCTGGGAATCCAAAGAATATTATAGGGCTCCTTCTGGTAAAAAGTCTACTTACTGTTCGACCTGAAACAGAGACACCAGTCAGTGCTGTTTCCATTCGGAGGATCCCCAGGGTTCCAGCAGATATGCCCCTTTATGACATACTGAATGAGTTTCAAAAAGGAAGCAGTCATATGGCAGCTGTTGTGAAAGCAAAAGGAAAAAGCAAGATTCTGCCACCTACAATGGATGGAGAGGAATCTGAAGAAAAAATAGTTATGATTGGCGATGCCCAACTGACTACTCCTTTACTAAGCAGGAATGATGAAAAATCAAATTGTGTTGTGGTTGAAATTGATAGATCTTCCATATCAACCAACACAAGTAAGCAAGCTTCTCCACAAAATAACGATGCCCATACAGTTGTATCAAAAGAGGATATTGAAGATGGTGAGGTTATTGGTATCATCACGCTTGAAGATGAAGAGATTGTGGATGAAACTGATGAATATGTTGATGTTCACAAAAGGTATGAGAACCTTTTTCAAAGAACTCTGTTAAAAGTACAACATGAACAAAAAATTATTTTTCGTTTGATCCTTTTTTACAGAATCCGAGTGGCGGCCGCAGCTGCTGCTTCTTCTGTGGCAAGAGCTCCATCAGTACGGAGATTAACTGCCCATAAAGGAGCTGTAAGTAAAAAATTATTTTATGTTTCTCTTCTTTATTTGAATAGGACATTGAAGTCTAGTTTTGTAACAAAATCAAAATCAGAAACATTTATTCGTGAAATTCAGATCGGCGATTGA 1590 42.45 MHPVNVAVATWMLARTTTATGMESQLESDISFGTPWWFIYAGICCCLVLFAGMMSGLTLGLMSLSRVDLEILQRSGTHSEKKQAATILPVVKKQHQLLVTLLLCNAAAMEALPLYLDKLFNQYIAIILSVTFVLAFGEVIPQSICTRYGLAVGASLVWVVRILMIICYPIAYPIGKILDCLLGHDEALFRRAQLKVLVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKAKGKSKILPPTMDGEESEEKIVMIGDAQLTTPLLSRNDEKSNCVVVEIDRSSISTNTSKQASPQNNDAHTVVSKEDIEDGEVIGIITLEDEEIVDETDEYVDVHKRYENLFQRTLLKVQHEQKIIFRLILFYRIRVAAAAAASSVARAPSVRRLTAHKGAVSKKLFYVSLLYLNRTLKSSFVTKSKSETFIREIQIGD 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4052612 4056789 - Bda024836.2 Bda08g00390 11246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00390 529 ProSiteProfiles CNNM transmembrane domain profile. 33 215 IPR002550 -
Bda08g00390 529 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 8 438 - -
Bda08g00390 529 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 462 504 - -
Bda08g00390 529 Gene3D - 215 356 IPR046342 -
Bda08g00390 529 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 462 504 IPR045095 GO:0010960
Bda08g00390 529 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 8 438 IPR045095 GO:0010960
Bda08g00390 529 CDD CBS_pair_CorC_HlyC_assoc 229 334 IPR044751 -
Bda08g00390 529 Pfam Cyclin M transmembrane N-terminal domain 43 214 IPR002550 -
Bda08g00390 529 SUPERFAMILY CBS-domain pair 219 421 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00390 K16302 CNNM; metal transporter CNNM - twl:120000120 689.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00021 Bda-Chr1:752581 Bda08g00390 Bda-Chr8:4052612 1.47E-167 dispersed
Bda08g00390 Bda-Chr8:4052612 Bda14g01534 Bda-Chr14:25852674 7.65E-142 dispersed
Bda08g00390 Bda-Chr8:4052612 Bda03g01259 Bda-Chr3:18514643 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g425 . . . Bda08g00390 Bpe04g01193 Bpe14g01325 Bma04g01184 Bma05g00943 Cmo08g01144 Cmo17g00260 . . . . . . . . . . . . . . Cla06g00543 Cam06g0586 Cec06g0583 Cco06g0591 Clacu06g0573 Cmu06g0567 Cre06g1333 Cone14ag0819 Cone15ag0815 . . . . Chy11g01433 . . . . . Bpe05g00754 . . . . . . Cma08g01171 Cma17g00273 Car08g01049 Car17g00248 Cpe12g00226 Cpe17g00123 Bhi12g01796 . . . . . . . . . . . . . Lsi09g01359 . . Cme11g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001077 3 9 2 2 3 2 3 2 2 2 2 2 3 1 1 3 2 4 3 2 2 2 2 2 2 2 2 9 2 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00390 Bda_Chr08 FPKM 10.925994 8.995114 10.398664 11.524075 16.257042 16.830246 16.274347 15.927572 14.669251