Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00422 ATGGATCGCCAGATTGACAATGATATTCAGATTGAGGGATTTGATAGGAATGGTTCTGGAGTTTCGGAGGATAAAGACTCTGTCATGCTCAAGATGAAGGAGCCTCTCCTTATTAAAGCTAACAGGATCAATACTACCTCTCAACTTGCCATTGTTGGCGCCAATGTTTGCCCCATCGAAAGCCTCGACTACGAGATCGCTGAGAATGATCTTTTCAAGCAGGACTGGAGATCAAGAACAAAGACAGAGATTTTTCAATATGTTGTCCTCAAATGGACCCTTGCACTGCTAATTGGTGTAGGCACTGGCCTTGTTGGCTTCTTCAATAACCTTGCTGTTGAAAACATAGCTGGGTTCAAACTTCTACTCAGTAACAACCTCATGCTTCAGAACAAGTTTTTTCAGGCATTTGTAGCCCTTGCTAGTTGCAACATGGTTTTGGCCATAGCTGCTTCAGCACTTTGTGCCTACATTGCTCCTGCAGCTGCTGGTTCTGGCATACCAGAAGTAAAAGCATACCTCAACGGAGTAGATGCTCATTCCATTTTGGCTCCGGCTACACTCTTTGTAAAGATTTTTGGTTCCATACTTGGTGTTGCTGCTGGATTTGTTGTGGGTAAGGAAGGACCTATGGTACACACTGGTGCATGCATTGCCAATTTACTTGGACAAGGAGGCTCCCGCAAATATCACTTAACTTGGAAGTGGCTCAGGTACTTCAAAAATGATAGGGACAGGCGGGATCTGATCACCTGCGGTGCTGCTGCTGGAGTAGCAGCTGCCTTCCGTGCCCCAGTTGGTGGAGTTCTCTTCGCACTGGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTTTGGAGAACCTTCTTTACCACGGCCGTAGTAGCAGTTGTGTTGAGAGGTTTCATCGTGTTTTGCCGGGGTGGAAAATGTGGACTTTTTGGTGAAGGAGGTCTTATTATGTTTGATGTCAATTCAGAACAAGTTTCTTACAGCACCCCGGATTTACTGGCGGTGATATTCCTTGGCGTTCTTGGTGGTGTCTTTGGAAGTCTTTACAATTATTTCGTCGACAAGGTTCTCCGCACTTATAGCATCATCAACGAGAAAGGTCCTTCCATGAAAATTCTACTTGTCGTTGCCATTTCTCTAATGACTTCTTGTTGCTCTTATGGACTTCCATGGTTCTCCATGTGCATTCCTTGCCCTGCTCACTTGGAGGATCAGTGTCCGACTGTAGGTCGCACCGGTAACTACAAGAACTTTCAATGTCCTCCTAACCATTACAATGACCTTGCTTCCCTTTTTCTCAACACCAACGACGATGCAATTCGCAACCTGTTGAGCCCTGGTTCCAACAAGGAGTTTCACTTCTCTACCCTTGTAGTTTTCTTTGCTGCCATCTACCTTCTCGGAATTATCACTTATGGAATTGCTATTCCCTCTGGCCTTTTCATTCCTGTAATACTTGCCGGAGCATCTTACGGCCGCCTTGTGGGGACACTCGTTGGCTCTCTATCAAATCTTGATGTGGGTCTCTTTGCTCTCCTCGGAGCTGCTTCTTTTCTCGGCGGGACCATGAGAATGACTGTTTCTCTGTGTGTCATCCTTCTTGAACTTACCAATGATCTATTGATGCTACCATTGGTTATGCTTGTTCTTCTGATTTCAAAAACTGTGGCAGACTGTTTCAACAAAGGTGTCTATGATCAAATTGTCAAAATGAAGGGGCTGCCATACTTGGAAGCTCATGCAGAACCATATATGAGACACTTGGTTGCAAGTGATGTCTTGTCTGGCCCGCTGATTACATTCTCCGGAGTAGAAAAAGTCGGAACCATAATGTATGCTTTGAAGATGACAAACCATAATGGATTCCCCGTTATCGACGAGCCTCCATTCACGGAAGCTCCAGAGCTGTGCGGGCTTGTTCTGAAGTCTCATCTTCTTGTTTTGCTCAAAGGGAAGAAATTCACAAAGCAGAAAGTGAGTACTGGATCGACAATCATCCGGAGTTTCAAAGCTCACGATTTTGCTAAAGCTGGATCGGGTAAGGGGGTGAAGCTGGAGGACTTGGATATCAAAGATGATGAGATGGAGATGTATGTAGATCTTCATCCTATTACTAATACATCCCCCTATACTGTAGTGGAAACAGTGTCTCTCGCTAAAGCGGCTATTCTCTTCCGGGAACTTGGCCTTCGCCACTTGATGGTCGTGCCGAAGACACCAGGGAGGCCTCCAATTGTCGGAATCCTTACCCGACACGACTTCATGCCGGAGCATGTGTTAGGACTTTACCCACATTTCAACACTCATAAGTAG 2325 45.72 MDRQIDNDIQIEGFDRNGSGVSEDKDSVMLKMKEPLLIKANRINTTSQLAIVGANVCPIESLDYEIAENDLFKQDWRSRTKTEIFQYVVLKWTLALLIGVGTGLVGFFNNLAVENIAGFKLLLSNNLMLQNKFFQAFVALASCNMVLAIAASALCAYIAPAAAGSGIPEVKAYLNGVDAHSILAPATLFVKIFGSILGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIVFCRGGKCGLFGEGGLIMFDVNSEQVSYSTPDLLAVIFLGVLGGVFGSLYNYFVDKVLRTYSIINEKGPSMKILLVVAISLMTSCCSYGLPWFSMCIPCPAHLEDQCPTVGRTGNYKNFQCPPNHYNDLASLFLNTNDDAIRNLLSPGSNKEFHFSTLVVFFAAIYLLGIITYGIAIPSGLFIPVILAGASYGRLVGTLVGSLSNLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVADCFNKGVYDQIVKMKGLPYLEAHAEPYMRHLVASDVLSGPLITFSGVEKVGTIMYALKMTNHNGFPVIDEPPFTEAPELCGLVLKSHLLVLLKGKKFTKQKVSTGSTIIRSFKAHDFAKAGSGKGVKLEDLDIKDDEMEMYVDLHPITNTSPYTVVETVSLAKAAILFRELGLRHLMVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHFNTHK 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4274229 4283125 + Bda024870.1 Bda08g00422 11278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00422 774 SUPERFAMILY Clc chloride channel 69 584 IPR014743 -
Bda08g00422 774 Gene3D - 582 764 IPR046342 -
Bda08g00422 774 SMART cbs_1 712 763 IPR000644 -
Bda08g00422 774 SMART cbs_1 601 654 IPR000644 -
Bda08g00422 774 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda08g00422 774 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda08g00422 774 PRINTS Plant CLC chloride channel signature 432 448 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda08g00422 774 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda08g00422 774 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda08g00422 774 Pfam Voltage gated chloride channel 148 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda08g00422 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 28 774 - -
Bda08g00422 774 CDD CBS_pair_voltage-gated_CLC_euk_bac 594 761 - -
Bda08g00422 774 Gene3D Clc chloride channel 83 581 - -
Bda08g00422 774 Pfam CBS domain 710 758 IPR000644 -
Bda08g00422 774 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda08g00422 774 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda08g00422 774 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda08g00422 774 PRINTS Chloride channel signature 530 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda08g00422 774 PRINTS Chloride channel signature 568 582 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda08g00422 774 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda08g00422 774 PRINTS Chloride channel signature 512 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda08g00422 774 ProSiteProfiles CBS domain profile. 708 772 IPR000644 -
Bda08g00422 774 CDD ClC_6_like 60 581 - -
Bda08g00422 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 28 774 - -
Bda08g00422 774 SUPERFAMILY CBS-domain pair 585 759 IPR046342 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00188 Bda08g00422 BCT
Bda03g00894 Bda08g00422 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00422 Bda-Chr8:4274229 Bda11g00061 Bda-Chr11:731868 0 dispersed
Bda03g00894 Bda-Chr3:7804892 Bda08g00422 Bda-Chr8:4274229 0 transposed
Bda07g01397 Bda-Chr7:16769406 Bda08g00422 Bda-Chr8:4274229 0 transposed
Bda06g00188 Bda-Chr6:2554598 Bda08g00422 Bda-Chr8:4274229 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00422 K05016 - jre:108988922 1251.11