Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00428 ATGGAAGGCGTACCCCACCCTATACCTCGAACAGTTGAGGAAGTTTTCAGTGACTTCAAAGGCAGACGTTCTGGCTTGATCAAAGCTCTTACCACTGATGTTGAGAAATTCTTTCAACAGTGCGATCCTGAGAAGGAAAACTTGTGTCTATATGGACTTCCAAATGAGACATGGGAAGTCAATCTGCCAGTAGAGGAGGTACCTCCAGAGCTTCCAGAACCAGCATTGGGCATAAACTTTGCTAGGGATGGTATGCAGGAGAAGGATTGGCTGTCGTTGGTTGCTGTTCACAGTGATTCATGGTTGCTAGCTGTTGCATTTTATTTTGGTGCACGCTTCGGGTTTGGTAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGATCTACCAACTATATTTGAAGTGGTGACAGGGAACGTTAAGCATCCTAAGGAGCAGTCGGCTACTCATAATAACAGCAGCAAAAGCAAATCAAGTGGGAAAATGTTGAAGCAATCTCGCCAATCTGAGCCACAGAACAAAGGAGTAAAGATGTCTCCACTCCCCAAAGAAGATGACGACAGTGGGGAGGAGGAAGAAGATGATGAGCAGGGAGCGACATGTGGTGCGTGTGGAGATAACTACGGAAATGATGAGTTTTGGATTTGTTGCGATATTTGTGAAAGATGGTTCCACGGGAAATGCGTTAAGATTACGCCTGCAAAGGCAGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTTTGA 768 45.05 MEGVPHPIPRTVEEVFSDFKGRRSGLIKALTTDVEKFFQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKHPKEQSATHNNSSKSKSSGKMLKQSRQSEPQNKGVKMSPLPKEDDDSGEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4319510 4324080 - Bda024877.1 Bda08g00428 11284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00428 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Bda08g00428 255 MobiDBLite consensus disorder prediction 142 201 - -
Bda08g00428 255 Pfam PHD-finger 202 251 IPR019787 -
Bda08g00428 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bda08g00428 255 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Bda08g00428 255 MobiDBLite consensus disorder prediction 186 200 - -
Bda08g00428 255 CDD PHD_AL_plant 202 251 IPR044104 -
Bda08g00428 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Bda08g00428 255 PANTHER CPG BINDING PROTEIN 1 252 IPR045104 GO:0006355|GO:0042393
Bda08g00428 255 MobiDBLite consensus disorder prediction 143 176 - -
Bda08g00428 255 SMART PHD_3 201 249 IPR001965 -
Bda08g00428 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Bda08g00428 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 252 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00180 Bda08g00428 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00428 Bda-Chr8:4319510 Bda13g01589 Bda-Chr13:39420346 3.12E-114 dispersed
Bda06g00180 Bda-Chr6:2481505 Bda08g00428 Bda-Chr8:4319510 4.79E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16257 PF12165 Alfin 3.90E-69 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00428 - - jre:109018723 466.463