Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00450 ATGCCCGGTTTAGTTTCAGTTAAAACTCCGCCTGAAGCTCCACCTCTCCGGATCTCCGTCCCGAACACTCCGACTCAGATCCAGAGATCGGATCTTGCTAACAGCAAGCCTCCATCTCCCCTAGCCAGAAAACAAATCTCCCCATCTCCTTCCCGATCCAAGCCGTCGCCGGATCGGAAGAAGAAGCCACAACCCGAAAGCCCAGTCCCCAGCCCCGCCCCACCTGATTCCTCCCTCGACAATCCGGATCTCGGACCCTTCCTACTCAAGCTCGCCCGCGACACTATCGCTTCAGGGGAAGGCCCGAACAAAGCACTAGACTATGCGATCAGGGCCTCCAAATCGTTTGAGCGATGTGTGACCGAAGAAGAGCCGAGCCTCGACCTGGCTATGAGCCTGCACGTTCTTGCAGCCATTTACTGTAGCTTGGGCAGATTCGAGGAGGCGGTTCCGGTTCTGGAGCAGGCAATTCGAGTCCCGATTGTTTCTCGTGGCCCAGATCATGCATTGGCTGGATTCTCTGGGTATATGCAATTAGGAGATACATATTCGATGCTTGGTCAAATTGAGCGCTCGATCGCTCGCTATGAGGATGGATTGAAGATTCAGATCGAGGCACTGGGAGACACGGATCCTAGGGTGGGAGAGACTTGCAGGTACTTATCTGAGGCCCATGTTCAAGCAATGCAGTTCGACAGAGCAGAAGAGTTGTGCAAGAAAACACTCGAAATTCATCGAGCACACAGTGAGCCAGCATCCCTTGAAGAGGCAGCCGATCGACGCCTTATGGCCCTTATTTCTGAAGCAAAAGGAGACTATGAGACAGCACTCGAGCACCTCGTCCTGGCCAGCATGGCAATGATTTCCAATGGACAAGACAATGAAGTTGCTGCCATTGATGTCAGCATCGGAAACATTTACATGTCTCTCTGTCGCTTTGACGAGGCTGTCTTTTCCTACCAGAAGGCTCTAACTGTCTTTAAAGCATCGAAAGGCGATAACCACCCTTCAGTTGCCTCCGTTTACATCCGCCTTGCAGATATATATCACAAGACTGGAAAGCTTCGAGAATCGAAATCATATTGTGAAAATGCTTTGAGGATTTATTCGAAGCCAGTGCCTGGAACTACGTCTGAAGAAATTGCCGGTGGGTTGACTGAAATATCGGCTATTTATGAGTCTGTTGCTGAGCCCGATGAGGCATTGAAGCTTTTGCAAAAGGCGATGAAGCTGTTAGAGGATAAACCGGGACAGCAAAGCACAATTGCTGGGATTGAAGCTCGGATGGGAGTAATGTTTTACATGGTTGGGAGGTATGAAGATGCAAGGAACTCTTTCGAGAGCTCCATAGCAAAACTCAGAGCCAGTGGGGAGAGAAAATCAGCCTTCTTTGGGGTTGTGTTAAATCAAATGGGATTGGCTTCTGTGCAGCTTTTCAAGATAGATGAAGCTACCGAGCTTTTTGAAGAAGCGAGGGGAATCCTGGAACAAGAGTGCGGGCCCTGTCATCAGGACACTCTTGGAGTTTACAGCAATCTTGCAGCCACCTATGATGCTATGGGGAGGACTGCAATCGAAATACTGGAGCATGTTCTTAAATTGAGAGAAGAAAAGCTCGGAATTGCAAATCCAGATTTCGAAGATGAGAAGAGAAGGTTAGAAGAGCTGTTGAAAGAAGCAGGCAGAACCAGAGACAGAAAAGCGAAATCCCTCGAAAACCTCATCGACCCAAACTCGAAGAAGCCGACAAAGAAAGAGGTAACAAAGAAGTGGTCTGGCTTGGGCTTTAGAATTTGA 1797 49.25 MPGLVSVKTPPEAPPLRISVPNTPTQIQRSDLANSKPPSPLARKQISPSPSRSKPSPDRKKKPQPESPVPSPAPPDSSLDNPDLGPFLLKLARDTIASGEGPNKALDYAIRASKSFERCVTEEEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLEQAIRVPIVSRGPDHALAGFSGYMQLGDTYSMLGQIERSIARYEDGLKIQIEALGDTDPRVGETCRYLSEAHVQAMQFDRAEELCKKTLEIHRAHSEPASLEEAADRRLMALISEAKGDYETALEHLVLASMAMISNGQDNEVAAIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGDNHPSVASVYIRLADIYHKTGKLRESKSYCENALRIYSKPVPGTTSEEIAGGLTEISAIYESVAEPDEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEDARNSFESSIAKLRASGERKSAFFGVVLNQMGLASVQLFKIDEATELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRTAIEILEHVLKLREEKLGIANPDFEDEKRRLEELLKEAGRTRDRKAKSLENLIDPNSKKPTKKEVTKKWSGLGFRI 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4630201 4632904 + Bda024900.1 Bda08g00450 11306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00450 598 Gene3D Tetratricopeptide repeat domain 173 284 IPR011990 GO:0005515
Bda08g00450 598 Gene3D Tetratricopeptide repeat domain 285 465 IPR011990 GO:0005515
Bda08g00450 598 Gene3D Tetratricopeptide repeat domain 466 589 IPR011990 GO:0005515
Bda08g00450 598 SMART tpr_5 382 415 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 215 248 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 130 163 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 507 538 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 465 498 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 297 330 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 173 206 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 257 290 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 423 456 IPR019734 GO:0005515
Bda08g00450 598 SMART tpr_5 339 372 IPR019734 GO:0005515
Bda08g00450 598 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Bda08g00450 598 Pfam MalT-like TPR region 134 281 IPR041617 -
Bda08g00450 598 PANTHER - 1 597 - -
Bda08g00450 598 MobiDBLite consensus disorder prediction 19 53 - -
Bda08g00450 598 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 597 - -
Bda08g00450 598 Coils Coil 543 566 - -
Bda08g00450 598 Gene3D Tetratricopeptide repeat domain 79 172 IPR011990 GO:0005515
Bda08g00450 598 MobiDBLite consensus disorder prediction 1 85 - -
Bda08g00450 598 Pfam Tetratricopeptide repeat 296 370 - -
Bda08g00450 598 SUPERFAMILY TPR-like 424 563 IPR011990 GO:0005515
Bda08g00450 598 SUPERFAMILY TPR-like 104 202 IPR011990 GO:0005515
Bda08g00450 598 Pfam Tetratricopeptide repeat 506 545 - -
Bda08g00450 598 SUPERFAMILY TPR-like 129 450 IPR011990 GO:0005515
Bda08g00450 598 MobiDBLite consensus disorder prediction 563 587 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00450 - - - csv:101207194 967.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00165 Bda-Chr6:2360479 Bda08g00450 Bda-Chr8:4630201 3.10E-28 dispersed
Bda08g00450 Bda-Chr8:4630201 Bda11g01634 Bda-Chr11:50128313 0 dispersed
Bda14g01155 Bda-Chr14:10719184 Bda08g00450 Bda-Chr8:4630201 0 transposed
Bda06g00163 Bda-Chr6:2347561 Bda08g00450 Bda-Chr8:4630201 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
Vvi2g867 . . . Bda08g00450 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi15g668 . Blo12g00219 . Bda08g00450 . . Bma04g00915 . . Cmo17g00485 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0872 Cone9ag0878 . . Chy11g01739 . . . . . . Bpe04g00954 . . . . . . Cma17g00513 . . . Cpe12g00441 Bhi12g02180 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00450 Bda_Chr08 FPKM 25.002359 28.193291 22.319433 25.121283 26.051697 19.403605 22.573826 5.572729 6.026643