Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00454 ATGGCACAATTAGAGGCATCTACAAATCAGGAGCTGATTCAGACGCCTCCTCTTTTTAAACTTCCCTCAAAGATTCTTTGTCGTGTGATGAACATTCAGCTTCTGGCAGAGCAAGAAATGGAGGATGTTTATGCACAAGTAACTCTAATTCCAGACCATAATCAAACTGATCCAGATGTTCCCGATTCTTGTGATGTTGAACCTTCAAAGCCAGCAGTGCACTCATTTTGCAAGGTTTTAACTGCATCAGATACCAGCACCCATGGAGGTTTCTCTGTACTTCGTAAACATGCTACTGAATGCCTTCCTCAGTTGGACATGACCCAGCCAACCCCGACACAGGAACTTGTCGCCAAGGACCTTCATGGTTATGAATGGAGATTCAAGCATATTTTTAGAGGTCAACCACGGAGGCACTTGCTGACGACTGGATGGAGTACGTTTGTAACCTGCAAGAGATTAGCTGCAGGGGATTCTTTTGTATTTTTGAGAGGGGACAGCGGGGAATTACGCGTTGGAGTAAGGCGCCTTCCTCGTCAGCAAAGCAACATACCTACAACTGTTATCTCTAGTCAGAGCATGCACCTTGGAGTGCTTGCCACTGCATCCCATGCTTTAGCGACCAAAAGCCCTTTTGTTGTGTATTATAAACCAAGGTCGAGTCAATTCATTGTGAGCTTGAACAAGTACTTGGAAGCTGTAAACAACAAGTTTGATGTTGGTATGAGATTTAAGATGAGGTTTGAGGGCGAGGATTCTCCTGAGAGAAGGTTTTCAGGTACCGTAGTCAAAGTTGAAGATATGTCTCCTCATTGGGCAGATTCGACTTGGCGATCACTGAAAGTTCAATGGGATGAACCTGCATCTATTCCAAGACCTGAGAGGGTTTCTCCTTGGGAGATAGAACCTTTTGTAGCTTCGGCAGCTGCCAATGTCCCTCTACCAGTTGTAGTAAAGAACAAAAGGCCCCGACCACCAACTGAAATCCCAGCTCTTGATTCTACTACTTCAACTGTATCCTCTCTTTGGCATTCTGGGTTGAGTCAATCTCATGATAGCACGCAATTGAGTGTTGCTGCCAAAAGCAAAAGAAGTGAAAATCTGTGCTGGCATCATAAACATTCCGATATTAGCAGCAATAGCAGCAACTCTGGGTCAATGACACAGAATGATGGTCCTTGGTTAGCTTCCTCACATGCAAATGGTTTGCAGAATCTAAGTCAGGAGGTCACAGAGGATCGCAAAATTCACTCACCTTGGCCTGATTACTCAGGCTATACTACTTCGCATTCATCAAAGCCAGACAATGACTTCAGGCTTGAGAATATGAGGAAGGGGAAGCAAGCTGATATCGGTACTAGCTGCCGCTTGTTCGGTATTGAGCTGATCAATAATTCTGCTTGTACACCTCGCTCAGAGAAGCCATCTAGCGAAACTGCTGAAGGGAATGCTGGTAGAATTTCATTGGCCGATTCTGACAAAAAATCTGAGTTTTCCAAGGCCTTGAAAGAAAAAAATCAAGAGTTGCTGCAGATATCCGCAAAAGAGATGTCAAGCAAGCAAAGCTGCTGCACCAACACTAGAAGCCGCACCAAAGTTCAAATGCTAGGAATGGCTGTTGGTCGTGCGGTGGACTTAACTATGTTGGAAGGGTATGATCAGCTGACAGATGAGCTTGAGAAAATGTTTGAAATTAAGGGGCAGCTTCGCCCACGGGACAAGTGGGAGATTGTTTTTACCGACGATGAAGGAGACATGATGCTCTTGGGAGATGACCCATGGCAGGAATTCTGTAGCATGGTGAGAAGAATATTGATATGTTCAAGCGAGGACGTGAAGAAAATGAGCTGCGGAAAGAAATTTTCCATTTCCTCATCAGAAGGCGAAGGGAATGTAACGAGCTCAGAGTTGGCTGAAATCTGA 1923 44.93 MAQLEASTNQELIQTPPLFKLPSKILCRVMNIQLLAEQEMEDVYAQVTLIPDHNQTDPDVPDSCDVEPSKPAVHSFCKVLTASDTSTHGGFSVLRKHATECLPQLDMTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTCKRLAAGDSFVFLRGDSGELRVGVRRLPRQQSNIPTTVISSQSMHLGVLATASHALATKSPFVVYYKPRSSQFIVSLNKYLEAVNNKFDVGMRFKMRFEGEDSPERRFSGTVVKVEDMSPHWADSTWRSLKVQWDEPASIPRPERVSPWEIEPFVASAAANVPLPVVVKNKRPRPPTEIPALDSTTSTVSSLWHSGLSQSHDSTQLSVAAKSKRSENLCWHHKHSDISSNSSNSGSMTQNDGPWLASSHANGLQNLSQEVTEDRKIHSPWPDYSGYTTSHSSKPDNDFRLENMRKGKQADIGTSCRLFGIELINNSACTPRSEKPSSETAEGNAGRISLADSDKKSEFSKALKEKNQELLQISAKEMSSKQSCCTNTRSRTKVQMLGMAVGRAVDLTMLEGYDQLTDELEKMFEIKGQLRPRDKWEIVFTDDEGDMMLLGDDPWQEFCSMVRRILICSSEDVKKMSCGKKFSISSSEGEGNVTSSELAEI 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4700324 4703724 + Bda024905.1 Bda08g00454 11310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00454 640 Gene3D - 523 616 - -
Bda08g00454 640 MobiDBLite consensus disorder prediction 375 409 - -
Bda08g00454 640 CDD B3_DNA 74 176 IPR003340 GO:0003677
Bda08g00454 640 PANTHER AUXIN RESPONSE FACTOR 9 1 627 - -
Bda08g00454 640 MobiDBLite consensus disorder prediction 468 483 - -
Bda08g00454 640 Pfam AUX/IAA family 508 612 IPR033389 -
Bda08g00454 640 Gene3D - 73 177 IPR015300 -
Bda08g00454 640 SUPERFAMILY CAD & PB1 domains 521 604 - -
Bda08g00454 640 ProSiteProfiles B3 DNA-binding domain profile. 76 178 IPR003340 GO:0003677
Bda08g00454 640 SMART B3_2 76 178 IPR003340 GO:0003677
Bda08g00454 640 MobiDBLite consensus disorder prediction 375 437 - -
Bda08g00454 640 Gene3D - 237 310 - -
Bda08g00454 640 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 627 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda08g00454 640 SUPERFAMILY DNA-binding pseudobarrel domain 65 205 IPR015300 -
Bda08g00454 640 Pfam Auxin response factor 202 281 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda08g00454 640 Pfam B3 DNA binding domain 76 176 IPR003340 GO:0003677
Bda08g00454 640 ProSiteProfiles PB1 domain profile. 528 620 IPR000270 GO:0005515
Bda08g00454 640 MobiDBLite consensus disorder prediction 468 492 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00098 Bda-Chr8:866056 Bda08g00454 Bda-Chr8:4700324 2.36E-38 dispersed
Bda08g00454 Bda-Chr8:4700324 Bda10g01146 Bda-Chr10:45519615 0 dispersed
Bda09g01003 Bda-Chr9:39937064 Bda08g00454 Bda-Chr8:4700324 1.12E-18 transposed
Bda06g00159 Bda-Chr6:2298415 Bda08g00454 Bda-Chr8:4700324 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16260 PF02362 B3 3.10E-21 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00454 K14486 - rcu:8286247 856.284