Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00458 CAGAAAATGCCCGAACCGGAGCTCGACAGTCCGGCGGTCTTTCCTCTCAAAACGACGGTAGATGATAGGGACCCACTCATGGACTTTGATGTCGATATGGGCAGCCCATGGCCGTTGGATCAGATGTCTCCCACCCTTATCTCTTCCTCCGATCAGCCTTTCTCTCCGCTCTGGGCTTTCTCCGACGGAGAAGACGACGGGGACGGAAAACTTCATCTCCATTCCCGCTCAGTCCGCGGTATGAGTAATTTGAACTTGGTGTGTCAAAAATCGACCAATAACATTGAAACAAGAGTTCTTCAACTTCCCCCTCTGTGGGGACTTTCATCAATGGAGAATCCAGATGAGTATTGTTTAATCAAAGAGAAGATGACTCGGGCTCTCAGATACTTAAAAGAATTGACAGACCAACACGTTCTAGCTCAGGTTTGGGCGCCCGTCAAAAGCGGTGGCCGATATATGCTTACCACACTCGAACAACCCTTTGTTCTCAACGCACAAAGCAATGGGCTTCATCAGTATCGAATGGTCTCTCTGATGTACATGTTCTCGGTCGATGTCGAAACCGGTGGAGTTCTCGGACTTCCCGGCCGGGTCTTCAAGCAGAAATTGCCGGAATGGACTCCAAATGTGCAATTTTACTCGAGCAAAGAGTATTCCAGACGGAATCATGCCCTTCACTACAATGTCCAAGGAGCCGTAAACTTGAAAAGCTCGGAAATCTTGGATCATCCGAATACACAGGTCATCAGCTACTATATACTCTTGGCAATGCTTTTGAACCAGATTTGCAACGAAGGTCGCCAAAATGCATTGGCTAAAATTTTGGAGGTACTAACAGTTGTATGCGAAAGTCACAAATTACCACTGGCTCAAACCTGGGTTCCTTGCAGGCATGGGAGTGTTCTTGCCAATGGTGGTGGTTTGAGGAAGAGCTGTTCTAGCTTTGATGGCAGTTGTAAGGGTCGAGTCTGCATGTCTGCTACTGATTTAGCATCCTACATAGTCGATGCTCGAGTTTGGGGGTTTAGAGAGGCCTGTCTTGAACACCATTTGCAGAAGGGCCAGGGAGTTGCAGGTCGGGCATTCTTGTCTCAAAGCTCGTGTTTTTCGACAGATATTACACAGTTCTGCAAGACTGAATACCCTTTAGTACACTATGCTCGATTGTTTGAGTTAAAGAGCTGTTTTGCAATCTGTCTACGGAGTAGTTTTACTGGAGATGATGACTATATTCTTGAATTTTTCCTCCCATCTTCCATAACTGAATACTATGAACAGCTGGCTCTGTTGGGATCTTTGTTGGCTACGATGAAACAGCATTTTCAAACCCTAAAGGTTTCGTCGGGAATCAAATTCGAAGAAGGTGAGGTTTTTGTAGAAATCATACAAGCTTCACCGGATGAAGGACTGAGTTCTAGATTCGAATATGTTCGAATACCTCAATCTGTCGAATTGCCACCCGGGTCTAACGTGGCGACCAACGGTGGAGAGACGACTGGATTTAATTTGTTGAAACAGAAGTTAGTGGTGGTTTGTGATAATGAAGAAAACAATGGTGGGGGTGAGAATAAAACCCATAACTCCATTCCTTCACCTCATAAGGACAGGAAGAAGACATCTGAGAGAAAACGTGGGAAAACGGAGAAATCGATAAGTTTAGATGTTCTTCAACAATATTTTACTGGAAGTCTTAAGGATGCTGCAAAGAGCCTTGGAGTTTGTCCGACCACAATGAAGCGGATCTGTCGGCAGCATGGAATTTCCCGATGGCCATCACGGAAGATCAACAAAGTTAACCGATCACTCTCGAAGCTAAAGTGTGTAATTGAATCTGTGCAAGTTGCTGAAGGGGCATTTGGTTTGACTCCTCTCACTACAAGTACTAGCTCTCCCCCATTCGTCCTGGATGGGCCAACTCAACGTAGCTCACCCGGCGATCATCACAGCGAGGAGAAAGAATCATCACTTGCCTCGAAAACGCCTGGAAAAGACCTATCGTCCTGGATGGAGGATAGACACATTAGGGGAACTTCAAGTTTGGAAGAATATATTCATGAGAAAAGTGGGTTCTTTCCCAAGATTTGTAAAGAGTCGAACAAGTCTAAAACGAAGAGTGGATCGAGGGAAGAGTCTGCAGGGACCCCTACTTCTCATGGATCTTGCCAAGGAAGTCCTGCTAATGAAATCTTACTAGCCAAAGATCCGCAAGTTTTCCCCAATCATGAGCACCCAATCAAACGAGCGGATTCCCCTGAAAAACTCAATCCAATTGCTCCATTGCCAATTCTAGAATTACTTACAGAACCCGAAGAACCATTTGGAGCAATGCTTATAGAAGATGCAGGAAGTTCAAAAGATTTAAGAAACCTCTGTCCTTCTGCAGCAGATGCTGTTTTGGACGAGCAAATCCCAGAATCTTGTTGGCCGAATCTTCCCCGTTCAACTCCCACACAATTCATCGATATCACCGGAACGAGGCAAGAAGCGAAGAGGATGACGATTAAGGCTACATACAAGGAAGATATAATAAGATTTCGCATACCCTTGAGCTTTGGTGTAGTGGAGTTGAAAGAAGAAGTGGCTAAGAGGCTAAAACTGGAGGTGGGTACTTTTGATATGAAATACATAGATGATGATCAAGAATGGGTTCTTATAGCCTGTGATGCAGACCTTCAAGAATGCGTTGATATTTCAAAATCATCAGGCAGTAATATGATTAGGCTCTTGATTCATGACTTATCAACCAATCTTGGAAGCTCTTGCGAGAGCACAGGGGAAGGATATTAG 2790 44.98 QKMPEPELDSPAVFPLKTTVDDRDPLMDFDVDMGSPWPLDQMSPTLISSSDQPFSPLWAFSDGEDDGDGKLHLHSRSVRGMSNLNLVCQKSTNNIETRVLQLPPLWGLSSMENPDEYCLIKEKMTRALRYLKELTDQHVLAQVWAPVKSGGRYMLTTLEQPFVLNAQSNGLHQYRMVSLMYMFSVDVETGGVLGLPGRVFKQKLPEWTPNVQFYSSKEYSRRNHALHYNVQGAVNLKSSEILDHPNTQVISYYILLAMLLNQICNEGRQNALAKILEVLTVVCESHKLPLAQTWVPCRHGSVLANGGGLRKSCSSFDGSCKGRVCMSATDLASYIVDARVWGFREACLEHHLQKGQGVAGRAFLSQSSCFSTDITQFCKTEYPLVHYARLFELKSCFAICLRSSFTGDDDYILEFFLPSSITEYYEQLALLGSLLATMKQHFQTLKVSSGIKFEEGEVFVEIIQASPDEGLSSRFEYVRIPQSVELPPGSNVATNGGETTGFNLLKQKLVVVCDNEENNGGGENKTHNSIPSPHKDRKKTSERKRGKTEKSISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVIESVQVAEGAFGLTPLTTSTSSPPFVLDGPTQRSSPGDHHSEEKESSLASKTPGKDLSSWMEDRHIRGTSSLEEYIHEKSGFFPKICKESNKSKTKSGSREESAGTPTSHGSCQGSPANEILLAKDPQVFPNHEHPIKRADSPEKLNPIAPLPILELLTEPEEPFGAMLIEDAGSSKDLRNLCPSAADAVLDEQIPESCWPNLPRSTPTQFIDITGTRQEAKRMTIKATYKEDIIRFRIPLSFGVVELKEEVAKRLKLEVGTFDMKYIDDDQEWVLIACDADLQECVDISKSSGSNMIRLLIHDLSTNLGSSCESTGEGY 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4769342 4772849 + Bda024910.1 Bda08g00458 11314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00458 929 MobiDBLite consensus disorder prediction 623 671 - -
Bda08g00458 929 Gene3D - 829 913 - -
Bda08g00458 929 ProSiteProfiles RWP-RK domain profile. 538 619 IPR003035 -
Bda08g00458 929 SUPERFAMILY CAD & PB1 domains 828 917 - -
Bda08g00458 929 Pfam PB1 domain 833 913 IPR000270 GO:0005515
Bda08g00458 929 MobiDBLite consensus disorder prediction 529 550 - -
Bda08g00458 929 Pfam RWP-RK domain 552 599 IPR003035 -
Bda08g00458 929 CDD PB1_NLP 833 913 IPR034891 -
Bda08g00458 929 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 233 926 - -
Bda08g00458 929 ProSiteProfiles PB1 domain profile. 832 914 IPR000270 GO:0005515
Bda08g00458 929 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 39 240 - -
Bda08g00458 929 SMART PB1_new 832 914 IPR000270 GO:0005515
Bda08g00458 929 MobiDBLite consensus disorder prediction 623 638 - -
Bda08g00458 929 MobiDBLite consensus disorder prediction 698 727 - -
Bda08g00458 929 MobiDBLite consensus disorder prediction 709 725 - -
Bda08g00458 929 PANTHER PROTEIN NLP8 233 926 IPR045012 GO:0003700
Bda08g00458 929 PANTHER PROTEIN NLP8 39 240 IPR045012 GO:0003700
Bda08g00458 929 MobiDBLite consensus disorder prediction 644 659 - -
Bda08g00458 929 MobiDBLite consensus disorder prediction 516 550 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00458 - - - csv:101212500 1150.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00162 Bda-Chr6:2337739 Bda08g00458 Bda-Chr8:4769342 0 dispersed
Bda08g00458 Bda-Chr8:4769342 Bda13g00247 Bda-Chr13:3105543 6.28E-24 dispersed
Bda08g00451 Bda-Chr8:4639458 Bda08g00458 Bda-Chr8:4769342 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00162 . 208 982 NLP Transcription Factor Family AT1G64530 52.8 3.9e-216 748.0
Bda08g00451 . 173 966 NLP Transcription Factor Family AT1G64530 51.9 7.0e-213 737.3
Bda06g00162 . 287 982 NLP Transcription Factor Family AT4G24020 54.4 6.7e-200 694.1
Bda08g00451 . 252 966 NLP Transcription Factor Family AT4G24020 55.2 7.4e-199 690.6
Bda08g00458 . 233 927 NLP Transcription Factor Family AT4G24020 54.2 4.1e-189 658.3
Bda11g00482 BCT 27 710 NLP Transcription Factor Family AT2G43500 51.0 1.4e-168 590.5
Bda13g00247 BCT 152 918 NLP Transcription Factor Family AT3G59580 53.3 4.7e-209 724.9
Bda11g00482 BCT 142 679 NLP Transcription Factor Family AT3G59580 58.3 2.0e-167 586.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16261 PF00564 PB1 8.90E-18 CL0072 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00458 Bda_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0