Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00462 TATTCAGAAATGGAGAACTTGATCTCTTTGGTGAACAAAATTCAGAGAGCTTGCACTGCCCTAGGTGATCATGGAGAAGCTAGCGCTTTGCCGACACTTTGGGACTCTTTGCCCACGATTGCTGTTGTCGGTGGTCAGAGCTCCGGCAAGTCTTCAGTTTTAGAAAGCATCGTCGGCAAGGACTTCTTACCTCGAGGATCTGGGATTGTTACTCGTCGGCCCCTTGTTTTGCAACTTCACAAACTTGACGAAGGAAGTAGAGAATATGCCGAGTTTCTTCATCTTCAAAGGAAAAGATTCACTGATTTTGCTGCTGTCAGAAAGGAAATTCAGGATGAGACTGATCGAGAGACTGGACGTTCTAAGCAAATCTCCAGTGTTCCAATTCATCTCAGTATATATTCTCCAAATGTTGTCAACTTAACACTCATTGATCTTCCTGGTCTCACAAAAGTAGCCGTTGAAGGACAACCGGATAGTATTGTGGTTGACATTGAGAATATGGTTCGCTCCTTCATTGAGAAGCCCAATTGTATAATCCTTGCCATATCCCCTGCCAATCAAGATCTTGCTACTTCAGATGCAATCAAAATCTCTCGTGAAGTTGATCCTACAGGGGAAAGGACATTTGGTGTGTTGACAAAGATCGATCTCATGGATAAGGGCACAGATGCAGTCGATATGCTAGAAGGAAAATCTTATCGGCTAAAATTTCCTTGGGTTGGCGTTGTTAACCGTTCACAAGCGGATATTAACAAGAATGTTGATATGATTGCCGCTCGACGCAGAGAACGTGAATATTTTGCAAATACTCCGGAATACAAGCACCTTTCTCACAGAATGGGTTCGGAGCATCTAGCAAAGATGCTTTCAAAGCATCTAGAAACTGTAATCAAGTCCCGTATCCCTGGCATCCAGAGCCTTATTAACAAAACCATAGCTGAACTTGAAGCTGAGCTGAGCCGTCTTGGAAGGCCCATTGCCACTGATGCCGGAGGGAAACTGTATATGATTGTGGAGATTTGTCGACTTTTTGATCAGAATTACAAAGAGCATCTCGATGGAATCCGACCTGGAGGAGATAAAATCTATAACGTCTTTGATAACCAACTTCCTGCTGCTCTAAAGAGACTGCAGTTTGACAAGCAACTTTCCATGGAAAATATTAAGAAACTCATTACTGAAGCTGATGGATATCAGCCACATCTAATAGCTCCCGAGCAAGGATACCGCCGTCTTATTGAATCTACTTTAGTCACTATCAGAGGTCCTGCTGAGTCTGCTGTTGATGCAGTTCATGTGTTGTTGAAGGATTTAGTTCACAGGGCCATCAATGAGACTCCAGAGTTAAAGCAATATCCTGGTCTCAGAGTGGAGGTAGGAAATGCAGCTATCGAGTCACTCGACAGAATGAGGGATCAAAGCAAGAAGGCAACTCTCCAACTAGTTGATATGGAATGCAGTTATCTGACGGTGGATTTCTTTCGAAAGCTTCCTCAGGATGTTGAAAAGGGTGGAAACCCCACACATTCAATTTTTGACAGATACAATGATTCGTATCTCAGACGCATCGGAACAACTGTTCTGTCATATGTAAATATGGTCTGTGCAACTTTACGTAACTCCATTCCAAAGTCCATTGTTTATTGCCAAGTGCGAGAAGCTAAACGAAGCCTACTCGACCATTTTTTTACTGAGTTGGGTAAATTGGAGCAAAAGCGACTATCATCTTTATTGAACGAGGACCCAGCCGTAATGGAGAGGCGCACTGCCCTTGCAAAGAGGCTGGAGTTGTACAAGAGTGCACAAGCCGAAATCGACACTGTGGCTTGGTCTAAG 1839 43.61 YSEMENLISLVNKIQRACTALGDHGEASALPTLWDSLPTIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLDEGSREYAEFLHLQRKRFTDFAAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVVDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAVDMLEGKSYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFANTPEYKHLSHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIAELEAELSRLGRPIATDAGGKLYMIVEICRLFDQNYKEHLDGIRPGGDKIYNVFDNQLPAALKRLQFDKQLSMENIKKLITEADGYQPHLIAPEQGYRRLIESTLVTIRGPAESAVDAVHVLLKDLVHRAINETPELKQYPGLRVEVGNAAIESLDRMRDQSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSSLLNEDPAVMERRTALAKRLELYKSAQAEIDTVAWSK 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4819488 4823854 - Bda033806 Bda08g00462 11318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00462 613 Pfam Dynamin family 40 216 IPR045063 -
Bda08g00462 613 Gene3D - 4 312 IPR027417 -
Bda08g00462 613 PRINTS Dynamin signature 204 220 IPR022812 -
Bda08g00462 613 PRINTS Dynamin signature 185 203 IPR022812 -
Bda08g00462 613 PRINTS Dynamin signature 135 152 IPR022812 -
Bda08g00462 613 PRINTS Dynamin signature 227 246 IPR022812 -
Bda08g00462 613 PRINTS Dynamin signature 62 79 IPR022812 -
Bda08g00462 613 PRINTS Dynamin signature 37 55 IPR022812 -
Bda08g00462 613 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 303 IPR030381 GO:0005525
Bda08g00462 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 311 IPR027417 -
Bda08g00462 613 PANTHER DYNAMIN 5 612 IPR022812 -
Bda08g00462 613 ProSiteProfiles GED domain profile. 521 613 IPR020850 -
Bda08g00462 613 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Bda08g00462 613 Gene3D Dynamin, middle domain 336 589 - -
Bda08g00462 613 Pfam Dynamin central region 224 491 IPR000375 -
Bda08g00462 613 SMART dynamin_3 4 254 IPR001401 GO:0003924|GO:0005525
Bda08g00462 613 PANTHER DYNAMIN-LIKE PROTEIN 1E 5 612 - -
Bda08g00462 613 Pfam Dynamin GTPase effector domain 517 609 IPR003130 GO:0003924|GO:0005525
Bda08g00462 613 CDD DLP_1 36 303 IPR001401 GO:0003924|GO:0005525
Bda08g00462 613 SMART GED_2 516 609 IPR003130 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00462 - - - twl:119981062 1130.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00152 Bda08g00462 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00462 Bda-Chr8:4819488 Bda11g00309 Bda-Chr11:3426578 0 dispersed
Bda14g01479 Bda-Chr14:21942636 Bda08g00462 Bda-Chr8:4819488 3.26E-12 dispersed
Bda06g00152 Bda-Chr6:2223738 Bda08g00462 Bda-Chr8:4819488 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g146 . . Bda06g00152 Bda08g00462 Bpe05g00697 Bpe07g00066 . . . . . . . . . Cpe14g00456 . . . . . . . . Cla07g01094 . Cec07g1258 Cco07g1235 . . Cre07g1519 . . Cone6ag0857 Cone9ag0859 . . . Cme07g01570 . . . . . . Bma05g00879 Bma12g00613 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00667 Chy07g01144 .
Vvi15g692 . . . Bda08g00462 . . . . Cmo08g00134 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g00715 Chy11g01888 . . . . . . . . . Sed09g0521 . . Cma08g00132 . . . Cpe17g01033 . Bhi12g02297 Tan06g1736 Cmetu11g0619 . . . . Cla06g00113 Cam06g0103 . . . . . Lsi09g01817 . . Cme11g02425
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00462 Bda_Chr08 FPKM 17.698736 19.864815 2.280718 2.1694 14.046019 12.826895 14.503645 0.518493 0.629705