Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00465 ATGGCTACCTCTGAATTCTTCTCTTTCTCTCTCTTCTTCTTTTTCTTATTTGTCTGTTTTATTCCTCAAACGGTAAGGTCCGTAATCACCTGCAAAGAATCATTCTGCAGGCAAGGATCGGAGCCGGCGGTTCGTTTCCCTTTCCGATTGGACTATACAAATCAAATTCGCTGTGGCTACGGACCAGATTTCGTTCTTTCGTGCGACAGTCAGCGCCAGACAATTTTGAATCTAACATCCTCAGGAAGCTTCGTCGTCACGGACATTGATTACGAGGCCGGTAGATTGTCGATCAACGATCCCGATGACTGCCTTCCGAGAAGGTTCCTCCAAAATTTCTCTATCGTCGACACGCCATTCCAGGTGGATGATTTCGAAAATCTTACCTTCGTCAACTGTTCGAATACCGATGAAACGGCTCCGTCTTTCGAGTCTATAGCTTGTCTCAGCGGCGTAAACTTCACGGTCAAGGTTAGGCGAACTGATTTTTACGGCGATAATTCTCGCATTTCACCGTCGTGCAGGACGATTTTGACGGTTATGGTTCCAGTTACGCGGAGTAGAAGCAACTCTAGTCTTAACGCTAATATTACGATGAGTTGGACTAAGCCTGATTGCTCTTCGTGCGAAAAGCGCGGTGGAGATTGCGGATTCACAAGTGGTAATGGTCTGGAAATTGGATGTTCTAATCCTCCAAGTAAAGGTCTGCCGAGAGCGGCCAAGTACGGCATAATCTTAGGCGCCGGTATACCTGGGTTTCTCTTCATTGTGGGGCTGGGTTCTTGCATCTGCGCCAAGGTGAAGTCCTATAGGCAGCGCCACCTGCGTAGCGAGAACATTTCAAGCTCAGGGTCGACGGTGGCGCTAGCCTCCGTTACGGTGGTGGGTCTTGACGAGCCGACGATCGAGTCGTACCCGAAGACCTTTCTGGGAGCGAGTCGCCGACTGCCGAAGCCATACGACGTCACTTGCTCGATATGCTTGTCGGAATACCAACCGGAAGAGGCGCTAAGAACTATACCAGACTGCGGCCATTATTTCCACGTCTCGTGTATTGACGAATGGCTTAAAATGAATGCCACGTGTCCGTTGTGTCGAAATTCGCCGGACGGGTCCTCTCAAACTTCCCTTTCCTCCCCTACGCCTAAATTTCTTCGAGCTTCATTTAATTTAGTCAATCTTTGTATTCTACTTAGAAAGATATCAATGGCTTATAGGGGGAGCCTGACAACAAGAGGGAGAATTATAGCCAGAAAACACTATCCTTCATTTTGTTTTATTCACGTTCATCATGATGATGAACGCAAGATTCAATCCATGGACAAGGATTCATCGAAGAAAAAGTTGACAGTTTCATCCATTGGGGGGTCTTCTGTAGGCAGCTTCAGCAAGTCTGGTGGTTTTATTCCCTTTGGCTATGATAGAAGACATGCAAACCTCTTGAGTCCCCACCTGGAGGAAAGAAAGAAACAGATGGCAGAAAAGGTAATAACCTCCACGCATGTTGTGATTGTAATTTGGCTCTACAGGTATGGTGTTGGTCCATTTACACCGCTGAAGGGATTATTTATCCAGGGTCCCTGCAATATGCAAGAAGGCATGGAAGGAAACCCTATGGCTGGAACTATGAAAAATGTATTAAGGGGCTTAGCCGTTGCTATAGTTTCTTTCACCATGAGTTTTCCAAAGGTAATATTTTTTTACTGGGTCACAACCACCTTGTTTTCACTCAGATATGGATTCGGTCAAACTATTCAAGTCCTTATTTCTCCTGGTGGAAGGAAATTTTTAGGTGTTCCTGATATACCAGTTCCAAACCCGAGTGATGCTTCACAACCTGCTTTCTCTTTACTCTCGGTTCTGAAATCATCAAAGGTTCAAGAGCGAAAGATATCTTCTTCTTTGGTTATTAGTGAGAGGATACGAAATTTAGATAGAGAAGTAAAAGGCCGAAAGAAAAACAAGAAGAGGTGA 1974 45.59 MATSEFFSFSLFFFFLFVCFIPQTVRSVITCKESFCRQGSEPAVRFPFRLDYTNQIRCGYGPDFVLSCDSQRQTILNLTSSGSFVVTDIDYEAGRLSINDPDDCLPRRFLQNFSIVDTPFQVDDFENLTFVNCSNTDETAPSFESIACLSGVNFTVKVRRTDFYGDNSRISPSCRTILTVMVPVTRSRSNSSLNANITMSWTKPDCSSCEKRGGDCGFTSGNGLEIGCSNPPSKGLPRAAKYGIILGAGIPGFLFIVGLGSCICAKVKSYRQRHLRSENISSSGSTVALASVTVVGLDEPTIESYPKTFLGASRRLPKPYDVTCSICLSEYQPEEALRTIPDCGHYFHVSCIDEWLKMNATCPLCRNSPDGSSQTSLSSPTPKFLRASFNLVNLCILLRKISMAYRGSLTTRGRIIARKHYPSFCFIHVHHDDERKIQSMDKDSSKKKLTVSSIGGSSVGSFSKSGGFIPFGYDRRHANLLSPHLEERKKQMAEKVITSTHVVIVIWLYRYGVGPFTPLKGLFIQGPCNMQEGMEGNPMAGTMKNVLRGLAVAIVSFTMSFPKVIFFYWVTTTLFSLRYGFGQTIQVLISPGGRKFLGVPDIPVPNPSDASQPAFSLLSVLKSSKVQERKISSSLVISERIRNLDREVKGRKKNKKR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4855970 4869346 + Bda024917.1 Bda08g00465 11321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00465 657 ProSiteProfiles Zinc finger RING-type profile. 324 366 IPR001841 -
Bda08g00465 657 CDD RING-H2_PA-TM-RING 323 366 - -
Bda08g00465 657 Pfam Wall-associated receptor kinase C-terminal 172 228 IPR032872 -
Bda08g00465 657 SUPERFAMILY RING/U-box 318 368 - -
Bda08g00465 657 Pfam Ring finger domain 323 366 IPR001841 -
Bda08g00465 657 Pfam Wall-associated receptor kinase galacturonan-binding 31 100 IPR025287 GO:0030247
Bda08g00465 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 370 IPR013083 -
Bda08g00465 657 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 379 - -
Bda08g00465 657 SMART ring_2 324 365 IPR001841 -
Bda08g00465 657 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 12 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00465 - - - bhj:120071243 349.362
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00146 Bda08g00465 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00465 Bda-Chr8:4855970 Bda13g00361 Bda-Chr13:4481199 5.75E-24 dispersed
Bda06g00147 Bda-Chr6:2176696 Bda08g00465 Bda-Chr8:4855970 0 transposed
Bda08g00595 Bda-Chr8:6068882 Bda08g00465 Bda-Chr8:4855970 9.05E-17 transposed
Bda09g01624 Bda-Chr9:47772653 Bda08g00465 Bda-Chr8:4855970 1.01E-37 transposed
Bda06g00146 Bda-Chr6:2168869 Bda08g00465 Bda-Chr8:4855970 7.72E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
Vvi15g727 . . . Bda08g00465 . . . . . . Cma06g01059 . Car06g00858 . Sed02g1748 Cpe08g00590 . Bhi01g00472 Tan10g0126 Cmetu06g1435 . Hepe05g2020 . Lcy11g2045 Cla05g00098 Cam05g0105 Cec05g0101 Cco05g0107 Clacu05g0094 Cmu05g0094 Cre05g0161 . . . . Lsi05g02120 . . Cme06g00101 Blo02g00328 . . . . . Bma02g01099 . . Cmo06g01042 . . . . . . . . . . . . . . . . . . . . . . Csa03g00809 Chy06g00101 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00465 Bda_Chr08 FPKM 58.931423 63.442936 108.680519 104.986282 26.273752 29.451164 22.109224 129.780701 137.121948