Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00467 ATGATTGATAAATCTGTAGAAAAATTGAATTCCGATATTACGGCTTCGTTATCGCTGTCTCCGTCACCGTCACCGTCATCGTCATCGTCAAATGACTCATCCAAAAATGAAGTAGAGCCAGTTAGAACGATAGTAGCTACAGCTGAGTTTGCGGAAGACGTAAGAAGCTTTACGTGCTTATCTCACGGATCGATATCAATAATCGGTCGCAGGAGAGCCATGGAGAACGCAGTTACCATGTTACCTGGAGTTTTGGCTGGAGATTTTAAGTCGTACGACTTTTTCGGTGTGTACGACGGCCATGGTGGCTCATCGGTCGCGTCTGCGTGTAAAGATCGTCTGCACCATTTGCTGGCCAAGGAGGTGGAAAGTCGTACAGGCGGCGGCGACAAAATGGACTGGAAGAAGGTGATGACTTCGTGTTTTCTGAAGATGGACGAGGAGATTTTTGTAAAACAGGAAGATGTGGAGAGCGCCGAGTTTAAGTCGATGGGGTCGACGGCAGTGGTCGTTATAATAGGGGAGGATGAGGTTGTGGTAGCTAATTGTGGAGACTCACGAGCCATACTTTATCGCGATGGCGTCGTTGTACCACTATCCCGTGATCACAAGCCTGATCTTCCTGATGAAAGGGAGAGAGTGGAGGCCGCAGGTGGAAGGGTCATAAATTGGAACGGATCTCGTGTTCAAGGAGTCTTAGCCACTTCAAGATCAATCGGTGATCACTATTTGAAACCATATGTGATCCCCGAACCAGAGGTCACTATAATTGAGCGAACTGAGCTTGATGACTTTCTTATAATTGCTAGCGATGGCCTCTGGAATACGATATCCAACGAGGTTGCGTGTGAGGTCGTGCAGAAATGTCTAAAATGCAAGAAGTGTTCAACGAGACTGAGTAGAAATTTTGCTGCTGAGGCGGCATCAATTATAGCTGAGCTAGCAATCGCAAGGGGGAGCAAAGGCAATATCAGCGTCATAGTTGTTGAGCTTCGGAAACCGAGCAGCACCAGTTCTTGA 1020 47.35 MIDKSVEKLNSDITASLSLSPSPSPSSSSSNDSSKNEVEPVRTIVATAEFAEDVRSFTCLSHGSISIIGRRRAMENAVTMLPGVLAGDFKSYDFFGVYDGHGGSSVASACKDRLHHLLAKEVESRTGGGDKMDWKKVMTSCFLKMDEEIFVKQEDVESAEFKSMGSTAVVVIIGEDEVVVANCGDSRAILYRDGVVVPLSRDHKPDLPDERERVEAAGGRVINWNGSRVQGVLATSRSIGDHYLKPYVIPEPEVTIIERTELDDFLIIASDGLWNTISNEVACEVVQKCLKCKKCSTRLSRNFAAEAASIIAELAIARGSKGNISVIVVELRKPSSTSS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4883071 4885463 + Bda024919.1 Bda08g00467 11323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00467 339 PANTHER ALPHABET, ISOFORM E-RELATED 19 333 - -
Bda08g00467 339 MobiDBLite consensus disorder prediction 9 38 - -
Bda08g00467 339 SMART PP2C_4 51 329 IPR001932 -
Bda08g00467 339 SMART PP2C_SIG_2 76 331 IPR001932 -
Bda08g00467 339 SUPERFAMILY PP2C-like 56 333 IPR036457 -
Bda08g00467 339 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 19 333 - -
Bda08g00467 339 MobiDBLite consensus disorder prediction 1 38 - -
Bda08g00467 339 CDD PP2Cc 61 331 IPR001932 -
Bda08g00467 339 Gene3D - 55 337 IPR036457 -
Bda08g00467 339 ProSitePatterns PPM-type phosphatase domain signature. 94 102 IPR000222 GO:0043169
Bda08g00467 339 ProSiteProfiles PPM-type phosphatase domain profile. 61 331 IPR001932 -
Bda08g00467 339 Pfam Protein phosphatase 2C 63 324 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00467 K14497 PP2C; protein phosphatase 2C [EC:3.1.3.16] - ming:122081358 365.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00467 Bda-Chr8:4883071 Bda10g00866 Bda-Chr10:43167648 6.07E-74 dispersed
Bda08g00467 Bda-Chr8:4883071 Bda14g00146 Bda-Chr14:997516 8.89E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g129 . . . Bda08g00467 . . . Bma14g00520 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0849 . . . . . . . . . Bpe11g00748 Bma05g00875 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006690 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 1 1 1 1 1 1 1 2 3 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00467 Bda_Chr08 FPKM 26.796297 30.572287 0.222353 0.319355 1.078554 0.958152 1.182477 0.088158 0.0