Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00471 ACTGAAACAGAAAAACCAGAGAAAGAGAAGGAGATGGGAAGTACAAAAGGCGAGTCTTACTTTGTTTTCATGAACTATGATTCAGAATACGAACGTCTTCGAGCGGACCGAACAAATGAAGGGGCGTATAAGCTTGATCTATACTTGAGTAAGAAGCACGATGAGCTTCTGGCAAGCACATTGGAGGCTGGAAGCTACAAAAAGACGATTTCTTTGGTCATTGTTGATGGGTTTTCTGTGGAAATTACTGAAGACCAGGCGAATGTGCTTAGATCTGCGAAGGAAGTTAGGGTCGTTGAGAAAAATCAAGAATTCGCGTAA 321 42.06 TETEKPEKEKEMGSTKGESYFVFMNYDSEYERLRADRTNEGAYKLDLYLSKKHDELLASTLEAGSYKKTISLVIVDGFSVEITEDQANVLRSAKEVRVVEKNQEFA 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4904202 4904720 + Bda024923.1 Bda08g00471 11327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00471 106 Pfam Peptidase inhibitor I9 50 104 IPR010259 -
Bda08g00471 106 PANTHER OS01G0220500 PROTEIN 12 105 - -
Bda08g00471 106 SUPERFAMILY Protease propeptides/inhibitors 64 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00471 - - - qsu:112023884 161.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00471 Bda-Chr8:4904202 Bda11g00106 Bda-Chr11:1352641 1.34E-09 transposed
Bda08g00471 Bda-Chr8:4904202 Bda01g01898 Bda-Chr1:55130119 1.24E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g120 Blo02g01146 . . Bda08g00471 Bpe05g00689 . . . . Cmo16g00602 . . . . . Cpe14g00466 . . . . . . . . Cla07g01419 Cam07g1520 Cec07g1616 Cco07g1576 Clacu07g1508 Cmu07g1478 Cre07g1855 . . Cone6ag0846 Cone9ag0843 . . . . . . . . . . Bma05g00871 . . . . . Cma16g00551 . . . . . . . . . . . . . . . . . . . Csa04g00649 Chy07g01161 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010675 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00471 Bda_Chr08 FPKM 2.0291 3.300761 69.096878 68.870621 220.271805 193.079163 193.492859 3.991286 2.864983