Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00477 ATGGAGAGCAGAAGAGTTTGTGTTACTGGTGCTTCTGGCTTTATCGGTGCTTCGCTTGTCAAGAAGCTCTTGGAAAATGGCTTCACCGTCCACGCCACTCTCAGAAACCTAGAGGATAGATCAAAAGTAGGTCTCTTGAAATCTCTCCCCAACGCAGAGACCAAATTAGTGTTATTTCAAGCAGATATATATAACCCAGATGAGTTTTCTCCCGCCATTACTGAGTGCGAGTACGTATTTCACCTGGCGACGCCATTGCAGCACGATAGTCAAAGCTCCAAGTTCAAGGATACTTGCGAGGCTGCTGTTGCTGGGACGAAAAGTATTGCTGATTCTTGCATTCGATCGCAAACTGTCAAGCGGCTGATATACACTGCTTCTTGTGTCTCATCGTCGCCATTGAAAGAAGATGGAAATGGGTTTAAATCTTCCTATATGGACGAATCTAGTTGGACGCCCCTTGATACCTCCTTCACTAATTCCACTGAAGCTTTACTGGCATACACAAGATCAAAGACTTTAGCAGAGAAAGAGGCACTGAGCTATAATGAGATTGAAAATGCTAAACTGGAAGTAGTAACACTTGCTTGTGGCCTAACCGGAGGAGAAACTCTTGTTTCGTATTTGACGGGTAGTGTTCTTGTATTGTTGTCTCCATTTACCGGCAATTTGGATTTGTACAAGACGTTGAAATTCTTGCAAGAACTTTGTGGTTCGATTTTACTTGTTCATGTTGAGGATGTTTGTCGAGCACATATCTTCTGCATGGAAATGCCGTCCATGAAAGGAAGGTTCCTCTGTGCAGCTCTCAACCCAACCATTAAAGACATTGCGATGTATTACAAAGAAAACTATCCAGAATCCCGTGTCTCGGAAGAGTAA 882 43.42 MESRRVCVTGASGFIGASLVKKLLENGFTVHATLRNLEDRSKVGLLKSLPNAETKLVLFQADIYNPDEFSPAITECEYVFHLATPLQHDSQSSKFKDTCEAAVAGTKSIADSCIRSQTVKRLIYTASCVSSSPLKEDGNGFKSSYMDESSWTPLDTSFTNSTEALLAYTRSKTLAEKEALSYNEIENAKLEVVTLACGLTGGETLVSYLTGSVLVLLSPFTGNLDLYKTLKFLQELCGSILLVHVEDVCRAHIFCMEMPSMKGRFLCAALNPTIKDIAMYYKENYPESRVSEE 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4932746 4934363 - Bda024928.1 Bda08g00477 11333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00477 293 PANTHER ANTHOCYANIDIN REDUCTASE-LIKE 4 290 - -
Bda08g00477 293 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 290 - -
Bda08g00477 293 Pfam NAD dependent epimerase/dehydratase family 6 261 IPR001509 -
Bda08g00477 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 286 IPR036291 -
Bda08g00477 293 Gene3D - 1 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00477 - - - csin:114258680 399.053
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00462 Bda08g00477 CCT
Bda08g00477 Bda13g00373 CCT
Bda07g00462 Bda08g00477 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00477 Bda-Chr8:4932746 Bda13g00381 Bda-Chr13:4743891 1.33E-106 dispersed
Bda08g00476 Bda-Chr8:4928365 Bda08g00477 Bda-Chr8:4932746 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g117 Blo02g01143 . . Bda08g00477 Bpe05g00685 . . Bma14g00556 . . . Cma15g01274 . Car15g01148 . . . . . . . . . . . . . . . . . . Cone12ag0602 . . . Csa05g00211 Chy09g01288 . . . Bda07g00462 . . Bpe11g00712 Bma05g00866 . . . Cmo15g01343 . . . . . Cpe13g00115 Bhi12g00156 . . Lac11g2008 . . Lcy12g1577 Cla01g00195 Cam01g0201 Cec01g0195 Cco01g0200 Clacu01g0197 Cmu01g0193 Cre09g2314 Lsi09g00183 . . Cme09g01832
Vvi15g750 . . . Bda08g00477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g02107 . . Cme06g00111 . . . Bda13g00373 . . Bma02g01085 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00820 Chy06g00111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003504 4 2 0 3 1 1 0 1 1 2 1 1 0 2 4 0 1 1 0 1 3 2 1 2 1 3 1 3 1 4 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00477 Bda_Chr08 FPKM 14.820942 15.434487 18.277855 19.212416 36.111019 33.226212 36.508984 15.927001 14.418698