Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00480 ATGGCGGATGCTGCAATTGCCCAAATGTCTGTCAATGGCGGACAAGTTCCAACGAAGAAACCAAGGAACAGTAGGAAGGCACTGAAGGAAAAAAATCATTCACCGAATGAGGCAATCAGCATCAACGAAAACGCTCCTACTCCGATTCCCGAATTTAATGATGATCCGGCGAAGGAGAACCATGAGAGCCTCTCTCAGACACGATCTTCAGTTAAGAAAGGGAAAACGAAAGCTCCTTCGAAGAAACAGACCAAACAATCCTTCGACAAGGAATTGCAAGAAATGCAGGAAATGCTTCAGAAAATGACGCTCGAGAAACAAAAGACCGAGGATCTGCTGAAAGCTAAAGATGAAATGATAAAGCTGAAGGACGAAGAGCTTGAAACGCGTGGAAAAGAGCAGGAGAAGCTTCAGGTGGAGTTCAAGAAGTTGCAGAAATTGAAGGAATTTAAACCTATCATGACTTTCCCTACAGTTCCATCCCTAAAAGACAAAGAGCTGGAGAACAAAGAGAAGAAAAAGGGATGCCATGAAATGAAAAGGCCTCCTCCACCCTACGTATTATGGAGTAAAGATCAATGGAATGAGATCAAGAAGGAGAATCCAGAGGCAGAATTTAAAGAAATCTCTAACATTTTGGGGGCGAAGTGGAAAAATGTCACTGTGGAAGAGAAAATGCCGTATGAACAGAAGTATCAGGCTGAAAAGGAAGCCTATCTGCAGGTAATTGCCAAAGAGAAACGCGAAAGTGAAGCAATGAAACTATTGGAGGAGGAGCAGAAACAGAAGATTGCAATGGAGCTTCTTGAACAATATCTCCAGAAAGAAAGAGATCCATCGAAACCCAAGCAACCAATGTCTGCATTTTTCCTCTTCTCTAATGAGAGGCGTTCAGCTCTGCTTTCAGAGAACAAAAACATCTTGGAGGTTTCGAAGATCTTGGGTGAAGAGTGGAAGAATATGACAGAAAAGCAGAGATCGCCATATGAAAAGATGGCGAAGAAGAACAAGGAAAAGTACGTGCAAGAAATAGAAGTTTACAGACAGAAGAAAGAGGAAGAAGCTGAACTTGTCAGGAAGGAGGAGGAAGAGCAACTGAAGCTTCAGAAACACGAAGCTCTGCAACTGCTGAAGAAGAAGGAGAAAACCAATGAAATAATCAAGAAAACGAGAGAAGATCGTCAAAAGAAGAGGAAAGAGAAGGAGGAGAAGAAGAACACCGACCCCAACAAGCCCAAAAAACCCGCCTCCTCTTACCTTTTATTCAGTAAAGAAGCCAGGAAGAACTTGTCAGAGCAGAGACCTGGGATCAACAACTCCACTCTTAATGCTTTGATTTCGTTAAAGTGGAAGGAGATGAATGAAACAGAAAGGAAGATATGGAATGACAGAGGAGCAGAATTAATGGACGCCCACAAAAAGGAAATGGAGGAATACAGTAAGTCTTTGGCTGAAAAAGAGAAGAACAAAGCAAATTGCATGGAGGAGAAGAACGAAGCTGATAATCCTATTATTAGGTTTACCTACTCTAGGAAGAAAAAAAATGTATAA 1551 41.91 MADAAIAQMSVNGGQVPTKKPRNSRKALKEKNHSPNEAISINENAPTPIPEFNDDPAKENHESLSQTRSSVKKGKTKAPSKKQTKQSFDKELQEMQEMLQKMTLEKQKTEDLLKAKDEMIKLKDEELETRGKEQEKLQVEFKKLQKLKEFKPIMTFPTVPSLKDKELENKEKKKGCHEMKRPPPPYVLWSKDQWNEIKKENPEAEFKEISNILGAKWKNVTVEEKMPYEQKYQAEKEAYLQVIAKEKRESEAMKLLEEEQKQKIAMELLEQYLQKERDPSKPKQPMSAFFLFSNERRSALLSENKNILEVSKILGEEWKNMTEKQRSPYEKMAKKNKEKYVQEIEVYRQKKEEEAELVRKEEEEQLKLQKHEALQLLKKKEKTNEIIKKTREDRQKKRKEKEEKKNTDPNKPKKPASSYLLFSKEARKNLSEQRPGINNSTLNALISLKWKEMNETERKIWNDRGAELMDAHKKEMEEYSKSLAEKEKNKANCMEEKNEADNPIIRFTYSRKKKNV 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4943171 4945476 - Bda024931.1 Bda08g00480 11336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00480 516 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 179 247 IPR009071 -
Bda08g00480 516 CDD HMG-box 412 477 - -
Bda08g00480 516 Pfam HMG (high mobility group) box 180 241 IPR009071 -
Bda08g00480 516 Pfam HMG (high mobility group) box 412 480 IPR009071 -
Bda08g00480 516 Pfam HMG (high mobility group) box 282 348 IPR009071 -
Bda08g00480 516 MobiDBLite consensus disorder prediction 379 411 - -
Bda08g00480 516 CDD HMGB-UBF_HMG-box 282 345 - -
Bda08g00480 516 Gene3D High mobility group box domain 176 272 IPR036910 -
Bda08g00480 516 Coils Coil 81 125 - -
Bda08g00480 516 MobiDBLite consensus disorder prediction 163 180 - -
Bda08g00480 516 SUPERFAMILY HMG-box 406 492 IPR036910 -
Bda08g00480 516 MobiDBLite consensus disorder prediction 161 187 - -
Bda08g00480 516 Gene3D High mobility group box domain 392 495 IPR036910 -
Bda08g00480 516 Gene3D High mobility group box domain 273 363 IPR036910 -
Bda08g00480 516 MobiDBLite consensus disorder prediction 1 94 - -
Bda08g00480 516 SUPERFAMILY HMG-box 170 242 IPR036910 -
Bda08g00480 516 Coils Coil 330 407 - -
Bda08g00480 516 SMART hmgende2 178 248 IPR009071 -
Bda08g00480 516 SMART hmgende2 281 349 IPR009071 -
Bda08g00480 516 SMART hmgende2 411 481 IPR009071 -
Bda08g00480 516 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 412 480 IPR009071 -
Bda08g00480 516 CDD HMGB-UBF_HMG-box 180 244 - -
Bda08g00480 516 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 282 348 IPR009071 -
Bda08g00480 516 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 15 489 IPR044601 GO:0003677
Bda08g00480 516 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 15 489 - -
Bda08g00480 516 SUPERFAMILY HMG-box 275 352 IPR036910 -
Bda08g00480 516 Coils Coil 469 496 - -
Bda08g00480 516 MobiDBLite consensus disorder prediction 379 419 - -
Bda08g00480 516 Coils Coil 229 249 - -
Bda08g00480 516 MobiDBLite consensus disorder prediction 54 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00480 K09273 UBTF; upstream-binding transcription factor - jre:108987126 564.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00480 Bda-Chr8:4943171 Bda14g01133 Bda-Chr14:10366119 2.03E-06 dispersed
Bda08g00480 Bda-Chr8:4943171 Bda11g00975 Bda-Chr11:9501991 1.46E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g113 . . . Bda08g00480 . . . . . . . . . . . Cpe14g00470 . . . . . . . . . . . . . . . . . Cone6ag0841 Cone9ag0838 . . . Cme07g01578 . . . . . . Bma05g00859 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00644 Chy07g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16264 PF00505 HMG_box 8.30E-14 CL0114 Bda TR