Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00482 ATGACAAAGCATCGTTTAAGGGATTCTATCAAGTCAATATTTGACAGTTATATAGATTCAGACGAGGAAGAGCGGAAGAAAAGATCTAAAGCAGAATTTGAAGAAAAAGTGCATAAATTATTGGAACGCCTGAGAGGCGAAAATCTTGATGAAAAAGATGGTATCCCAATAGAGAACTCATCAAGAGAACCCGTTGTTGAGCTAATTGAAGATTTCTACAATCAGTACCAAACGCTTTATACTCGATATGATCATCTAACTGGAGAGCTAAGGAAAAAAGTTCATGGCGGACATGAGAAGGACAGCGCTTCATCTAGCTCTGATTCAGATTCTGATTCTTCCTCCAAGGGAAAACGGGGCAAAAATGGAAAGTTGGAAAGCGAGTTCCAGAAGATAAGTGATGGTTTAAAAAAGGAACTTGAAGCTGCACAGTTGGAATTAGCTGACTTGAAAAGGAAGTTGACAAATGCAAATGAAGAAAAAGAAGCTGTGAACTCTGAACGATTAACTGCCCAAACCAAGATACAAGACGCGGAGAAGAGCATTGAAAATTTGAAGGTTGAAGCCGAAACACTGGGTGTTGAAAAATCTCAATATCTGGCAGAGATTGAAGAGCTGAAAGGGAGGTTGAGTACTGCAAGTGAAATAGAAGCTGAACTGAAGGATAAACTTGGAAGCTTTGAAGTAGAGAAAGATATGTTGATAAATGAGAAGGATAATGCTTTGAGGAGGATTGAAGAATTGGATTCAAAACTGCATACTTCGAGTAATATAGAAGCTGAATTGAATAAAAGATTGCGAGACATGGAGATGGAAAGAGAGAACTTGATAAAAGAGAAGGAGACGTCTTCGAAACTGATTGAAGAACTGGATTTGAAATTTAATACATCTAGTAAAGCTGAAGCAGAACTGAATAGAATATTGCATGTCATGGAGATGGAGAAAAATAACTTGATAACAGTGAACGAAACTTCTTTAAAAAACATTGAAGAACTGGATTCGAAACTGATTATTTCGATGAAAGTGGAAGCTGAACTGAATGCAAGATTGGGAGAAATGGAAAGAGAAAGGGATGACTTGTTAATGGAGAAGGAGACTGTCTGCAGAAAGATTGAAGAAGGAGAAAAAGTTGCAGAAGAATTAAAAGTTTTGGTTGATCAGCTGAAAGATGAAAAACTAACCCTTGCGCAAGAGTTAGAAGCTGTGAGAGGGGAAGTTTCTGCTATGGCACAGCAAATATCAGATTTAAAACAAGCTCTTGAAGCTTCAGATGAAGAGAACAGATCCTTAAAGGCCAAAATTTTGGAGATATCAAATGAAATTCAACAGGAAAAGATTATGAAGGAAGAAGGAGAAAAGGTTGCGGAAAAATTAAAAGTTATGGTTGATCAGCTGAAAGATGAAAAACTAACCCTTGCGCAAGAGTTAGAAGCAGTGAGAGGGGAAGTTTCTGCTATGGCGCAGCAAATATCAGATGTAAAACAAGCTCTTGAAGCTTCAGATGAAGAGAACAGATCCTTAAAGGCCAAAATTTTGGAGATATCAAATGAAATTCAACAGGAAAAGATTATGAAGGAAGAGCTTTTGACTGAATCACATCAGCTAAAAGAAAAAATGGGTGTAAAGGATAGGGAATTTTCATTTCTCACAGAAAAGCATGAAGAGCATGTAAATGGATCAACAGCTCAAGTAAAGCAGCTAGAAAATCAATTGAGCAGTCTGGAAATGGAGTTGGATTCCTTGCGAACCCAGAAAAAAGATGCGGAAGTGCAGCTTGAGATGAAAGCCAACGACGCAAAACAACAAGGGGAAGAGAATGCAAGGCTACAAGCTCAAGTTTCAGAACTAGAAAGGCAGTTAGAAGAAAGAGAGAAGGATTTTTCAGCTATCAAGAACAAAATGGAGGACAATGAAGCTGAATCATCATCAAGGATAGCGACTTTAACAGCACAGATCAACGGTCTGTCAGGAGACCTAGATTTGGTCCGTGCTCATAAGGACCAACTGGAAGAACAAATGGTGTCTAAAAGTGAAGAAGATTCGTCCCAAATCAAAATTTTAACCGATCAAGTGGAAGCATTGCAGCAGCAGCTAGAACTCGAACAAAATCATAAAACTGAACTGGAGATGCAACTGGAGGAAAAAATTCAAATAATTTCTGAACATGTACTTCAGGTGCAAACATTGAGTGAAGCAGTAGCAAGCAAGAAGTCAGAGCATCAGCAACTTTTAGAAGAGAAAGAAGGTTTAGTAGTGCAAATAAAGGAGTTGGAATTAGCGAATGACTCTACAATGAAGGGGAAAAATGAGTTTGAAGAGCAAATAAAAGTGAAGATCAATGAGAACAATCAATTAAGAGATGAAAATGAGAAGCTAGAGAACAGAATTTTGGAATTGGAGAAAACATTGGCTGAATTGGAGGTGCAACTGGAGGGGAAAAGTCAAAGAATTTCTGAACACGAACTCGAGTTGCAAACGTTGAATGAAGCAATAGCGAGTAAAAATTCGGAACACGAAAAAGTTCTAAGAGAGAAGGAAGGTTTAATAGCGCAAATAAAGGATTTGGAATTTGAAAATGACTCCACAATGAAGGAAAAAAGTGAGGTCGAAGAGCAAATAAAAGTTGCAATGAACGAGAACAATCAGCTAAGAGAGGAAAAAGAGGCGTTACATAACAGAATTTCAGAACTAGAGAGGACGTATACTGATCGAGAGGTGGATTTCTCTGCTCTTCAGGCTAAGCTTAAAACTGGAGAGGATGAAGCTTCATCTCAACAAACGGCCTTTGCTGAAAAGGTCAACACACTGCAAGAGGAGTTGAGTTCATTGGAGGCCCTGAAGAGCCAAATCGAGTTGCAGCTCGGACAAGAGAAAGAAGAACTTTCAGGAAGCCTTGCCAATATTGAGAACGAGAAAACAGAAATGATGAAGACGATTACTGATTGTCAGAAAATGCTACAGGAGCAGGAGGATGCATACAAGAACTTAGATGAACAACATAAACAAATTAAAGATCATTACCATGACTGCAATGCAAATCTCGAGAAGGCAGAAAGGAAGATGGAAGAAATGACCAGAGAGTTTCAGAACAGCATAGAATCAAAAGATCAAAGGGTAGCCGATCTGGAACAAATGATTGAGAATCTAAAAGAAGAGTTGGAGGAAAAAGAAGAGCGACACAGTACCTTGGTGGAATATGTTAGTTCCATTGAAGTGCAGCTTCGACTATCAAACCAGAAACTCCGAATCACAGAGCAACTACTAACCGAGAACGAAGAGAACTTCAAAAATACAGAGCAAAAGCTTCAAGAAGAACAGAGACTACTGGAGGAAAAAATTGCCGAACTGTCAAAAACGATTGCTTGTAATAACGAAGCTTACCAGAGAACGATATCCGATGTCTCAAAGACAATGAACAGCACTTTGATTGGACTGGAAACTGTCATCCACAAACTTGAAGAAAGCTATGTAAACTACGAGAAATGTATTACAAAAGCATCAAATGAGCTTCAGATTGCAAAGAACTGGGTAACAGAGGTTATTAAAGAAAGAGCTCAGCTCAAGGAAGAGTTATGTAGTATAAATGAGCTACTGCAAGGTAAAAAGGAAAAAGAGTCGGAACTGAGAGAGCGGGTAGAGAAGTTAGAGAGCAAGGCCAGACAAGAGGAATCCGAGAAGGGGGGCCTGGCAAAAGCAGTTAACCAACTGGAGAAGAGGGTAGAAGAATTAGAGAAAATGATGCAAGAGAAGAATGAAAACATACTAGGCGTTGGAGAAGAAAAGCGGGAAGCCATCAGGCAACTGTGCGTGTGGATTGAATATCATCGGGGCCGCTATGATTATCTCAAGGAAGTCCTCTCCAATTTGAAAGTTAGAAGCCAACCAGTGAGGTAG 3894 39.11 MTKHRLRDSIKSIFDSYIDSDEEERKKRSKAEFEEKVHKLLERLRGENLDEKDGIPIENSSREPVVELIEDFYNQYQTLYTRYDHLTGELRKKVHGGHEKDSASSSSDSDSDSSSKGKRGKNGKLESEFQKISDGLKKELEAAQLELADLKRKLTNANEEKEAVNSERLTAQTKIQDAEKSIENLKVEAETLGVEKSQYLAEIEELKGRLSTASEIEAELKDKLGSFEVEKDMLINEKDNALRRIEELDSKLHTSSNIEAELNKRLRDMEMERENLIKEKETSSKLIEELDLKFNTSSKAEAELNRILHVMEMEKNNLITVNETSLKNIEELDSKLIISMKVEAELNARLGEMERERDDLLMEKETVCRKIEEGEKVAEELKVLVDQLKDEKLTLAQELEAVRGEVSAMAQQISDLKQALEASDEENRSLKAKILEISNEIQQEKIMKEEGEKVAEKLKVMVDQLKDEKLTLAQELEAVRGEVSAMAQQISDVKQALEASDEENRSLKAKILEISNEIQQEKIMKEELLTESHQLKEKMGVKDREFSFLTEKHEEHVNGSTAQVKQLENQLSSLEMELDSLRTQKKDAEVQLEMKANDAKQQGEENARLQAQVSELERQLEEREKDFSAIKNKMEDNEAESSSRIATLTAQINGLSGDLDLVRAHKDQLEEQMVSKSEEDSSQIKILTDQVEALQQQLELEQNHKTELEMQLEEKIQIISEHVLQVQTLSEAVASKKSEHQQLLEEKEGLVVQIKELELANDSTMKGKNEFEEQIKVKINENNQLRDENEKLENRILELEKTLAELEVQLEGKSQRISEHELELQTLNEAIASKNSEHEKVLREKEGLIAQIKDLEFENDSTMKEKSEVEEQIKVAMNENNQLREEKEALHNRISELERTYTDREVDFSALQAKLKTGEDEASSQQTAFAEKVNTLQEELSSLEALKSQIELQLGQEKEELSGSLANIENEKTEMMKTITDCQKMLQEQEDAYKNLDEQHKQIKDHYHDCNANLEKAERKMEEMTREFQNSIESKDQRVADLEQMIENLKEELEEKEERHSTLVEYVSSIEVQLRLSNQKLRITEQLLTENEENFKNTEQKLQEEQRLLEEKIAELSKTIACNNEAYQRTISDVSKTMNSTLIGLETVIHKLEESYVNYEKCITKASNELQIAKNWVTEVIKERAQLKEELCSINELLQGKKEKESELRERVEKLESKARQEESEKGGLAKAVNQLEKRVEELEKMMQEKNENILGVGEEKREAIRQLCVWIEYHRGRYDYLKEVLSNLKVRSQPVR 1297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4958573 4962571 - Bda024933.1 Bda08g00482 11338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00482 1297 Pfam KIP1-like protein 14 84 IPR011684 GO:0003779
Bda08g00482 1297 Coils Coil 652 711 - -
Bda08g00482 1297 Coils Coil 343 363 - -
Bda08g00482 1297 Coils Coil 933 1066 - -
Bda08g00482 1297 Coils Coil 231 251 - -
Bda08g00482 1297 Coils Coil 490 538 - -
Bda08g00482 1297 Coils Coil 550 640 - -
Bda08g00482 1297 Coils Coil 23 50 - -
Bda08g00482 1297 Coils Coil 726 900 - -
Bda08g00482 1297 Coils Coil 448 482 - -
Bda08g00482 1297 MobiDBLite consensus disorder prediction 93 128 - -
Bda08g00482 1297 Coils Coil 133 223 - -
Bda08g00482 1297 Coils Coil 1149 1169 - -
Bda08g00482 1297 Coils Coil 1198 1260 - -
Bda08g00482 1297 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Bda08g00482 1297 Coils Coil 371 440 - -
Bda08g00482 1297 Gene3D - 953 1137 - -
Bda08g00482 1297 Gene3D - 769 950 - -
Bda08g00482 1297 PANTHER COP1-INTERACTIVE PROTEIN 1 246 289 - -
Bda08g00482 1297 PANTHER COP1-INTERACTIVE PROTEIN 1 1 247 - -
Bda08g00482 1297 PANTHER COP1-INTERACTIVE PROTEIN 1 288 445 - -
Bda08g00482 1297 PANTHER COP1-INTERACTIVE PROTEIN 1 804 1294 - -
Bda08g00482 1297 PANTHER COP1-INTERACTIVE PROTEIN 1 449 805 - -
Bda08g00482 1297 Coils Coil 1081 1119 - -
Bda08g00482 1297 Coils Coil 259 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00482 - - - adu:107479777 857.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00139 Bda08g00482 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00482 Bda-Chr8:4958573 Bda12g00010 Bda-Chr12:72564 4.88E-07 dispersed
Bda15g00279 Bda-Chr15:5553399 Bda08g00482 Bda-Chr8:4958573 9.01E-06 transposed
Bda06g00139 Bda-Chr6:2108276 Bda08g00482 Bda-Chr8:4958573 3.71E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00482 Bda_Chr08 FPKM 0.278317 0.0 0.596746 0.535115 0.0 0.0 0.564775 2.977358 2.966159