Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00486 ATGTTTCCTGCAACCAAGTTCAGCGAGCATCTTAACCACTCTAGACTCTTCTCCCGGACGGAAATGAAACCTAAAGTTGTGAGAATATTAACCACTGATGAAGACGCGACTGATTCTTCTAGTGACGAAGAATGTGTTGTTTATCCTCGTAGAAGAATCAAGAGGTTTGTAAATGAAATCATCATCGAGTTGCCGAGTTCGAAGGTGGTAGGAGGAGTTTGTCCGTCCAAACCAACAAGAACTTGCAGGAAAAAGTCAACCGGGAAATCAGCGGTTAGTCTGCGGTCTAGGAAGCTGCAGCCCGAGAAGAGATTTCGCGGCGTTCGACAGAGACCGTGGGGGAAATGGGCGGCGGAAATCAGAGACCCACTGCGACGTGTTCGTCTGTGGTTGGGAACATATGACACTGCTGAAGAAGCTGCAATGGTTTACGACAACGCCGCCATTAAACTCCGGGGACCGGATGCACTTACGAATTTCGCCACTCCGACTAGTTTTCTGCCGGAGGTTTCCTCAGCTTACAACTCTGGGGAAGAGTCCAACAGCAACCTTCCCTCTCCGACGTCTGTGCTTCGTCACTGTCCCTCTCAGTCCAGTCAAGACGAAGAATCTCTGAGCAGTTCAACTCCGGCAGCTGAGAAAAAAACAGAGGATAGTACCGAATGTCTAGATACCAACGAATATTCAAGCACATCCGAGAATATTTCTGATTTCGACTCATTGCTTCCTACGGATATTTTTGATTTTCATACATCACCTCCGACTCTCTTGGACGAAACATTTCAGCAACACAGCATTACAATGGACGTATACAGCAAAAAATCACGTCTCAATTCGGATGAAGTATTCGGGTTCGGGTTCTCGTCGTGGAACGAGGAAGATTCCTTCCAGCTGGAGGACATCGGCGACCTTTTCGGGTCGGATCCTATTATCGCGCTGTAA 942 47.88 MFPATKFSEHLNHSRLFSRTEMKPKVVRILTTDEDATDSSSDEECVVYPRRRIKRFVNEIIIELPSSKVVGGVCPSKPTRTCRKKSTGKSAVSLRSRKLQPEKRFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFATPTSFLPEVSSAYNSGEESNSNLPSPTSVLRHCPSQSSQDEESLSSSTPAAEKKTEDSTECLDTNEYSSTSENISDFDSLLPTDIFDFHTSPPTLLDETFQQHSITMDVYSKKSRLNSDEVFGFGFSSWNEEDSFQLEDIGDLFGSDPIIAL 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4994107 4995048 - Bda024937.1 Bda08g00486 11342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00486 313 SUPERFAMILY DNA-binding domain 104 161 IPR016177 GO:0003677
Bda08g00486 313 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Bda08g00486 313 MobiDBLite consensus disorder prediction 171 231 - -
Bda08g00486 313 SMART rav1_2 104 169 IPR001471 GO:0003700|GO:0006355
Bda08g00486 313 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 309 - -
Bda08g00486 313 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Bda08g00486 313 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Bda08g00486 313 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Bda08g00486 313 MobiDBLite consensus disorder prediction 171 213 - -
Bda08g00486 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 309 - -
Bda08g00486 313 CDD AP2 103 161 IPR001471 GO:0003700|GO:0006355
Bda08g00486 313 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00486 Bda-Chr8:4994107 Bda09g00020 Bda-Chr9:329903 2.84E-95 dispersed
Bda14g00915 Bda-Chr14:7163557 Bda08g00486 Bda-Chr8:4994107 6.72E-20 dispersed
Bda11g00224 Bda-Chr11:2749556 Bda08g00486 Bda-Chr8:4994107 8.63E-40 wgd
Bda06g00137 Bda-Chr6:2065455 Bda08g00486 Bda-Chr8:4994107 1.26E-151 wgd
Bda07g00467 Bda-Chr7:5943302 Bda08g00486 Bda-Chr8:4994107 5.37E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16266 PF00847 AP2 1.10E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00486 - - pvy:116145351 294.664