Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00486 | ATGTTTCCTGCAACCAAGTTCAGCGAGCATCTTAACCACTCTAGACTCTTCTCCCGGACGGAAATGAAACCTAAAGTTGTGAGAATATTAACCACTGATGAAGACGCGACTGATTCTTCTAGTGACGAAGAATGTGTTGTTTATCCTCGTAGAAGAATCAAGAGGTTTGTAAATGAAATCATCATCGAGTTGCCGAGTTCGAAGGTGGTAGGAGGAGTTTGTCCGTCCAAACCAACAAGAACTTGCAGGAAAAAGTCAACCGGGAAATCAGCGGTTAGTCTGCGGTCTAGGAAGCTGCAGCCCGAGAAGAGATTTCGCGGCGTTCGACAGAGACCGTGGGGGAAATGGGCGGCGGAAATCAGAGACCCACTGCGACGTGTTCGTCTGTGGTTGGGAACATATGACACTGCTGAAGAAGCTGCAATGGTTTACGACAACGCCGCCATTAAACTCCGGGGACCGGATGCACTTACGAATTTCGCCACTCCGACTAGTTTTCTGCCGGAGGTTTCCTCAGCTTACAACTCTGGGGAAGAGTCCAACAGCAACCTTCCCTCTCCGACGTCTGTGCTTCGTCACTGTCCCTCTCAGTCCAGTCAAGACGAAGAATCTCTGAGCAGTTCAACTCCGGCAGCTGAGAAAAAAACAGAGGATAGTACCGAATGTCTAGATACCAACGAATATTCAAGCACATCCGAGAATATTTCTGATTTCGACTCATTGCTTCCTACGGATATTTTTGATTTTCATACATCACCTCCGACTCTCTTGGACGAAACATTTCAGCAACACAGCATTACAATGGACGTATACAGCAAAAAATCACGTCTCAATTCGGATGAAGTATTCGGGTTCGGGTTCTCGTCGTGGAACGAGGAAGATTCCTTCCAGCTGGAGGACATCGGCGACCTTTTCGGGTCGGATCCTATTATCGCGCTGTAA | 942 | 47.88 | MFPATKFSEHLNHSRLFSRTEMKPKVVRILTTDEDATDSSSDEECVVYPRRRIKRFVNEIIIELPSSKVVGGVCPSKPTRTCRKKSTGKSAVSLRSRKLQPEKRFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFATPTSFLPEVSSAYNSGEESNSNLPSPTSVLRHCPSQSSQDEESLSSSTPAAEKKTEDSTECLDTNEYSSTSENISDFDSLLPTDIFDFHTSPPTLLDETFQQHSITMDVYSKKSRLNSDEVFGFGFSSWNEEDSFQLEDIGDLFGSDPIIAL | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4994107 | 4995048 | - | Bda024937.1 | Bda08g00486 | 11342 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00486 | 313 | SUPERFAMILY | DNA-binding domain | 104 | 161 | IPR016177 | GO:0003677 | |
Bda08g00486 | 313 | ProSiteProfiles | AP2/ERF domain profile. | 104 | 161 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00486 | 313 | MobiDBLite | consensus disorder prediction | 171 | 231 | - | - | |
Bda08g00486 | 313 | SMART | rav1_2 | 104 | 169 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00486 | 313 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 309 | - | - | |
Bda08g00486 | 313 | Gene3D | AP2/ERF domain | 103 | 162 | IPR036955 | GO:0003700|GO:0006355 | |
Bda08g00486 | 313 | PRINTS | Ethylene responsive element binding protein signature | 105 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00486 | 313 | PRINTS | Ethylene responsive element binding protein signature | 127 | 143 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00486 | 313 | MobiDBLite | consensus disorder prediction | 171 | 213 | - | - | |
Bda08g00486 | 313 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 | 5 | 309 | - | - | |
Bda08g00486 | 313 | CDD | AP2 | 103 | 161 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00486 | 313 | Pfam | AP2 domain | 104 | 153 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g00486 | Bda-Chr8:4994107 | Bda09g00020 | Bda-Chr9:329903 | 2.84E-95 | dispersed | |
Bda14g00915 | Bda-Chr14:7163557 | Bda08g00486 | Bda-Chr8:4994107 | 6.72E-20 | dispersed | |
Bda11g00224 | Bda-Chr11:2749556 | Bda08g00486 | Bda-Chr8:4994107 | 8.63E-40 | wgd | |
Bda06g00137 | Bda-Chr6:2065455 | Bda08g00486 | Bda-Chr8:4994107 | 1.26E-151 | wgd | |
Bda07g00467 | Bda-Chr7:5943302 | Bda08g00486 | Bda-Chr8:4994107 | 5.37E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16266 | PF00847 | AP2 | 1.10E-13 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00486 | - | - | pvy:116145351 | 294.664 |