Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00488 ATGGAAAATACTGGGTTAACCACTGATCAGAAAACAGGCGTCGAACATACCAAAGATCAAAACGGAGTTGATCAGGTGGTTCTTAAGAACTCCAGAGGGGCCTCTGCTCGGGTTAGTTTGCATGGAGGCCAGGTTCTTTCATGGAAGACTGACCGAGGTGAAGAGCTGCTCTTCACAAGCAGTAAGGCCATATTCAAACCACCAAATGCTGTGCGAGGAGGCATTCAAATTTGTTTCCCGCAGTTCGGAACTCGTGGAAACCTCGAACAGCACGGGTTTGCCAGGAACAAATCATGGGTGGTTGAAGAAGATCCTCCACCTCTACATCTCAATGAATCTATCGGTAAAGCTTTTGCCGACTTACTACTCAAACCCTCTGAAGACGATATGAAGATATGGCCCCACGGTTTTGAATTCAGGCTTAGGGTCAGCTTGGCAGCAGATGGAAGTCTTGCTTTGACATCAAGAATAAGGAATATAAATTGCAAGCCTTTCAGTTTTTCAATTGCTTATCATACATATTTCTCCATTTCTGATATCAGGTATCGAAAAAAAGAGAATTACATGGTGTGGAATCCATGGGAGAAGAAGGCTCGATCCATAATTGATTTTGGAGACGAAGAGTACAAGCACATGCTCTGTGTCGACGGGGCGGCGATTGAAAAACCGATAACGTTGAAGCCGGGGGAGGAATGGACGGGGCGATTAGAAATTGCAGTGGTTGCTTCCGGTTAA 735 45.44 MENTGLTTDQKTGVEHTKDQNGVDQVVLKNSRGASARVSLHGGQVLSWKTDRGEELLFTSSKAIFKPPNAVRGGIQICFPQFGTRGNLEQHGFARNKSWVVEEDPPPLHLNESIGKAFADLLLKPSEDDMKIWPHGFEFRLRVSLAADGSLALTSRIRNINCKPFSFSIAYHTYFSISDIRYRKKENYMVWNPWEKKARSIIDFGDEEYKHMLCVDGAAIEKPITLKPGEEWTGRLEIAVVASG 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5001058 5002806 - Bda024939.1 Bda08g00488 11344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00488 244 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 188 243 - -
Bda08g00488 244 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 6 181 - -
Bda08g00488 244 PIRSF PHexose_mutarotase 3 187 IPR025532 -
Bda08g00488 244 PIRSF PHexose_mutarotase 181 243 IPR025532 -
Bda08g00488 244 MobiDBLite consensus disorder prediction 1 21 - -
Bda08g00488 244 Gene3D - 19 184 IPR014718 GO:0030246
Bda08g00488 244 Gene3D - 185 242 IPR014718 GO:0030246
Bda08g00488 244 Pfam Aldose 1-epimerase 24 179 IPR008183 GO:0005975|GO:0016853
Bda08g00488 244 Pfam Aldose 1-epimerase 186 238 IPR008183 GO:0005975|GO:0016853
Bda08g00488 244 SUPERFAMILY Galactose mutarotase-like 15 238 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bda08g00488 244 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 188 243 - -
Bda08g00488 244 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 6 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00488 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - tcc:18606640 370.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00488 Bda-Chr8:5001058 Bda10g00760 Bda-Chr10:42056375 3.28E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g97 Blo02g01136 . . Bda08g00488 Bpe05g00676 . . . . Cmo16g00612 . . . . . Cpe14g00477 . . . . . . . . Cla07g01406 Cam07g1507 Cec07g1604 Cco07g1561 Clacu07g1497 Cmu07g1467 Cre07g1843 . . . . . . . Cme07g01587 . . . . . . Bma05g00849 . . . . Cma06g01035 Cma16g00563 . . . . . . . . . . . . . . . . . . . Csa04g00635 Chy07g01178 .
Vvi15g771 . . . Bda08g00488 Bpe14g00958 . . . . . . Cma14g02087 . Car14g01886 . . Cpe03g01770 . . . . . . . . . . . . . . . . Cone11ag0472 Cone18ag1038 . . . Cme06g00125 Blo02g00336 . . . . . . . . . Cmo14g02147 . . . . . . . . . . . . . . . . . . . . . . Chy06g00124 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000273 4 7 4 5 2 4 5 4 4 4 4 4 6 4 5 6 4 8 6 4 4 4 4 4 4 4 4 15 8 4 149
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00488 Bda_Chr08 FPKM 139.950439 141.114426 151.08342 140.232773 91.081665 114.694298 95.93721 144.115173 151.760956