Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00490 AAGGGAATTGGAATTCATCTCTGCCTAACCATGAAGGACTGCGCTCCCTACATGGCGATGATCCTCGTCCAACTCGCCTACGGCGGAGCGAACGTCCTCATGAAAGTTGCCCTCGTACAGGGACTCAATCAGTTCGTCTTCATGGTCTACCGGCATCTCACCGCCGTCTGCGTCTTCGCTCCGATCGCCTTCGTACTCGAGAGGAAACAACGCCCTCCTCTCTCCGTTTCTACCATGATTAAGGTCTTCTTCCTCGCGTCGCTGGGAACGACTGTCCACCTTAATCTGTTCTATGCTGGATTAGGCTACACTTCTGCCACAGTCGCCAGCGCTTTGGGCAACGTTATTCCAAGTTTTACGTTTGTCTTGGCTGTTATTTTTGGGATGGAGAAAGTGAAGATAAGGAGGATTAGAAGTCAAGCAAAAGTGATAGGGACGATGATATGCATCGGTGGGTCGCTTGTTTTCACGTTCTGGAAAGGAGGCTACGTTTGGAGAGGGCTTGTGAGGAAGCCATTGATAGACATGTATGGTCATCAAGCTTCAGCTGCTCACAACACTCATCACAGGAATGATTGGATCAAGGGTTCGGCTCTCATCCTCGCCGCTGATATTTCATGGAGTATGTGGGTTGTTTTACAGGTGACCATCAACAAAATATACCCAGCTCAGTTATCGTTGAACGCTTTGAATTGTTTGTCCGCAACCGTACAATCCGCTCTCCTTGCTCTTTTATTCGCTAGAGATGCTAAGTTGTGGAAGCTCCAGCGAAATGTGCAGATCCTCTTAACCATCCTCTACACTGGAATTGTGCTATCGGGCTTCGTATACTACTTGCAGATATGGTGCATCAACAAGAAAGGACCAGTATTTGCAGCAATGTTCAGTCCACTGGGACTGGTAGCAGTGGCAATCTTTTCTGCCATAGCTTTTGCGGAGAAACTTCATCTGGGAAGCTTGATCGGAGCTGTACTCATTGTAGTAGGGCTTTATTGTTTTCTATGGGCAAAAAGAGGAGATGGAATTTCGACACAACAACCGGAGGAGAGGAAGGAGGTCGTTGATCATCAAATGGTCGAAATTTCGATAAATAACCATCACCCACTTACCGATCCCGTCCCACATGAAAGAACATAA 1137 47.49 KGIGIHLCLTMKDCAPYMAMILVQLAYGGANVLMKVALVQGLNQFVFMVYRHLTAVCVFAPIAFVLERKQRPPLSVSTMIKVFFLASLGTTVHLNLFYAGLGYTSATVASALGNVIPSFTFVLAVIFGMEKVKIRRIRSQAKVIGTMICIGGSLVFTFWKGGYVWRGLVRKPLIDMYGHQASAAHNTHHRNDWIKGSALILAADISWSMWVVLQVTINKIYPAQLSLNALNCLSATVQSALLALLFARDAKLWKLQRNVQILLTILYTGIVLSGFVYYLQIWCINKKGPVFAAMFSPLGLVAVAIFSAIAFAEKLHLGSLIGAVLIVVGLYCFLWAKRGDGISTQQPEERKEVVDHQMVEISINNHHPLTDPVPHERT 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5011608 5013603 + Bda024941.1 Bda08g00490 11346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00490 378 PANTHER WAT1-RELATED PROTEIN 16 354 IPR030184 GO:0016021|GO:0022857
Bda08g00490 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 158 - -
Bda08g00490 378 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020|GO:0016021
Bda08g00490 378 Pfam EamA-like transporter family 17 155 IPR000620 GO:0016020|GO:0016021
Bda08g00490 378 PANTHER WAT1-RELATED PROTEIN 16 354 - -
Bda08g00490 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00490 - - - pop:7455015 447.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00165 Bda-Chr7:2048804 Bda08g00490 Bda-Chr8:5011608 0 dispersed
Bda08g00490 Bda-Chr8:5011608 Bda11g00413 Bda-Chr11:4446787 0 dispersed
Bda08g00490 Bda-Chr8:5011608 Bda13g01413 Bda-Chr13:36847609 1.64E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g288 . . . Bda08g00490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g01403 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012233 3 0 0 1 0 0 4 0 0 0 0 0 2 0 0 3 0 0 0 0 0 0 3 1 2 1 0 2 1 4 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00490 Bda_Chr08 FPKM 8.442343 9.311608 13.369387 14.292564 4.314919 3.108068 3.954098 28.821535 29.46656