Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00498 ATGGAACAGAAAAGCTTTTTGTTGTCGGCTTTGGGTGTAGGCGTCGGAGTAGGAGTTGGTATCGGATTGGCTTCTGGACAGAGTTTGAAGAAATGGACAGAGTTTTCTTATGATTCCATTACCGCTGAGAAGATGGAGCAGGAAATGCTTAGGCAGGTTGTGGATGGCAGAGAGAGCAAAGTTACTTTCGATGAATTTCCATATTACCTAAGGCAACAGACTCGAGTACTTCTAACAAGTGCTGCTTACGTTCATCTAAAGCATGCCGACGTCTCCAAACATACTCGTAACCTCTCTCCGGCAAGCCGGGCAATATTGCTCTCTGGACCTGCTGAACTCTACCAACAAATGTTAGCCAAAGCTTTATCCCACTACTTCGACGCAAAATTGCTGCTGTTAGACGTAACTGACTTTTCATTAAAGGTGAGCGCTTTTAAGAGATCAACTTCAGAGTCAACATTAGAACGATGGTCTGGCTTATTTGGATCAGTTTCGAGCTTTCTTCAAGGGGAAGAACCAAAAGGTGTATATCTGAAGAAGTTTGTTTTCATGTTTCGGGGAGCAGAACGGACTTCTTCTCTTCCAAAGCTTCGAAGAAATGCCTCTGCCTCAGCCAACATTATCAACATTGCTGCACAATCCTCCCCTGCAAATATAGCGCCTCTCAAGCGCACCAGCAGCTGGTCATTTGATGAAAAGCTTCTGATTCAAACTTTGTATAAGACTCTTGTGTTTGTGTCTAAAACTAGTCCCATTGTTCTATATCTTCGAGACGTGGATAACTTCTTGCTCAGGTCACCAAGGATATATAACTTATTTCAGAAAATGTTGAAGAAACTGTCTGGAAAAATATTAATTTTAGGGTCGAGAATTCTTGATCCAGGCGATGATTTTAGGGAGGTGGATGAGAGGCTTACTGCTCTTTTCCCTTATAATATTGAGATTAAACCTCCTGAAGAAGAACCTCATCATGTTAGCTGGAAGTCCCAATTAGAGGAAGATATGAAGACGATCCAGGTTCAGGATAATAGAAACCACATCATGGAAGTCCTTTGGTCGAATGATCTTGATTGTGATGATCTGGATTCAATCTGCATTGCAGACACAATGGTTCTGAGTAACTACATAGAAGAGATTGTAGTCTCTGCAATTTCATATCATTTAATGAATAGTAAAAATCCTGAATACAGAAATGGAAAACTCGTTATTTCTTCTAAAAGTTTGTCCCATGGATTGAGTATTTTTGAGGAAGGCAAGTCGAGTGGCAAATATACATTAAGGATGGAAGCTCGGGCTGAAACATCAAAGGTCTATGCCGGCTTGAAGCCTGAAACAAAATGTGAAACCACCGCTCCTGGAAACAGAAGTGGAGACGAAACAGCTGCTCCAGCAGCTTCAAAAACAGATGCAGAGAATTCAGCTCCACCGTCAAAAGCTCCAGAAGTTCCACCTGATAATGAGTTTGAGAAACGCATAAGGCCAGAAGTCATACCAGCAAATGAGATTGGTGTTACATTTGCTGATATTGGTGCCTTGGAAGAGATCAAAGAATCTCTTCAGGAGCTAGTAATGCTCCCTCTTCGAAGACCAGACCTATTTAATGGAGGTCTTCTTAAGCCTTGCAGAGGGATATTGCTATTTGGGCCTCCAGGCACTGGGAAAACTATGCTGGCAAAGGCCATAGCCAAAGAAGCTGGTGCAAGCTTCATTAACGTATCCATGTCAACCATTACTTCCAAATGGTTTGGAGAAGATGAGAAAAACGTTCGAGCATTATTCACCTTGGCGTCCAAAGTATCCCCAACTATTATTTTTGTGGATGAAGTAGATAGCATGCTTGGTCAACGAACAAGAGCAGGGGAGCATGAAGCAATGCGGAAGATAAAAAATGAATTCATGACTCATTGGGACGGGCTATTGACAAAACCAGCCGAGCGGATTCTTGTTCTTGCAGCTACAAATAGGCCTTTTGACCTTGATGAAGCAATTATCAGGCGTTTTGAGCGGAGAATTATGGTGGGGTTACCATCTGTGGAGAACAGAGAAATGATACTGCGAACGCTCTTGGCCAAAGAAAAGGTGGAAGAAGGACTGAATTTCAAAGAACTTGCAACAATGACAGAAGGATATAGTGGGAGTGATCTTAAGAACTTGTGCACTACATCGGCCTATCGGCCAGTTCGGGAGTTAATACAACAAGAGAGACTTAAGGATGAAGAGAAGAAACGAAGAGCAGTTGAGGGACAGAATGCAGGAGACGTAGCAGACTCAGTGGAGGTGGCTAAAGAGGAAAGAGTAATTACCCTCAGGCCATTAAACATGGAGGATTTCAGGCAGGCCAAAAATCAGGTTGCGGCCAGCTTTGCCGCTGAGGGATCTATAATGAGTGAATTGAGACAGTGGAACGACTCGTATGGGGAAGGGGGCTCCAGAAAGCAGCAACAATTGTCATACTTCCTA 2460 43.05 MEQKSFLLSALGVGVGVGVGIGLASGQSLKKWTEFSYDSITAEKMEQEMLRQVVDGRESKVTFDEFPYYLRQQTRVLLTSAAYVHLKHADVSKHTRNLSPASRAILLSGPAELYQQMLAKALSHYFDAKLLLLDVTDFSLKVSAFKRSTSESTLERWSGLFGSVSSFLQGEEPKGVYLKKFVFMFRGAERTSSLPKLRRNASASANIINIAAQSSPANIAPLKRTSSWSFDEKLLIQTLYKTLVFVSKTSPIVLYLRDVDNFLLRSPRIYNLFQKMLKKLSGKILILGSRILDPGDDFREVDERLTALFPYNIEIKPPEEEPHHVSWKSQLEEDMKTIQVQDNRNHIMEVLWSNDLDCDDLDSICIADTMVLSNYIEEIVVSAISYHLMNSKNPEYRNGKLVISSKSLSHGLSIFEEGKSSGKYTLRMEARAETSKVYAGLKPETKCETTAPGNRSGDETAAPAASKTDAENSAPPSKAPEVPPDNEFEKRIRPEVIPANEIGVTFADIGALEEIKESLQELVMLPLRRPDLFNGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRTRAGEHEAMRKIKNEFMTHWDGLLTKPAERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILRTLLAKEKVEEGLNFKELATMTEGYSGSDLKNLCTTSAYRPVRELIQQERLKDEEKKRRAVEGQNAGDVADSVEVAKEERVITLRPLNMEDFRQAKNQVAASFAAEGSIMSELRQWNDSYGEGGSRKQQQLSYFL 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5073205 5078022 + Bda033808 Bda08g00498 11354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00498 820 Pfam ATPase family associated with various cellular activities (AAA) 544 674 IPR003959 GO:0005524|GO:0016887
Bda08g00498 820 MobiDBLite consensus disorder prediction 443 488 - -
Bda08g00498 820 Gene3D - 676 782 - -
Bda08g00498 820 ProSitePatterns AAA-protein family signature. 647 666 IPR003960 GO:0005524|GO:0016887
Bda08g00498 820 Gene3D - 503 789 IPR027417 -
Bda08g00498 820 Pfam AAA+ lid domain 698 740 IPR041569 -
Bda08g00498 820 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 820 - -
Bda08g00498 820 SMART AAA_5 540 677 IPR003593 -
Bda08g00498 820 CDD AAA 542 675 - -
Bda08g00498 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 743 IPR027417 -
Bda08g00498 820 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 820 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00498 - - - zju:107430238 1197.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00769 Bda-Chr6:10690578 Bda08g00498 Bda-Chr8:5073205 0 dispersed
Bda08g00498 Bda-Chr8:5073205 Bda10g00680 Bda-Chr10:41025769 2.58E-16 dispersed
Bda08g00498 Bda-Chr8:5073205 Bda10g00619 Bda-Chr10:40200828 2.12E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00498 Bda_Chr08 FPKM 15.731761 17.724157 20.480677 21.028069 26.702559 25.015034 28.780609 26.947392 25.947996