Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00510 ATGGTTTGTGCTTACGTGTGGAACGGTGAGTACGAGAAAAGTAAGAAGATCTTTATGGAAATGACTAAATTGAGTTTGGAAATAAACGAGTTTAGTTGCACCGGTGTGCTTGGAGGAATTTTTTGTGGGGAAGAAGGAAAAAAAATTCACTCGCTGACAATGAAAAAGGGTTTATTATGTGGGTGTTCGATTCATTTGAACAATGCAATTATAAACATGTATTCTAGGTGTGGTTATAAATCTGATGCAGCGAAAGTGTTCGATGATATGAGTGAACCAGATATTGTCTCTTGGACTGGAAGAATTGGGGCTGCTCTAGATGAAGGAGAAGCTTTGGAATGTTTTCGATATCTCCGGGCCAGAGATATTGAGTTGAACGAGTATACTATCGTCAATCTTCTTTCAGTAATTACAAGCTCTGGAATGTTATTGTCTGGCAATCAAATTCAAGCACATTGTCATAAAGATGGACATTTGTTATGCATTTCTGTCAGCAATCATTTAATATCTATGTATAGTAAACATGGGCAAATGGACGAGGCCAAGCTTGTATTCAATGACATGGTATCTATAGATTCTGTTTCTTGCAATTCTCTTATTGATGGCTATTCTGAAAATGGACTTCTCAAGGAGACTTTCGCGGCATTCTCTCATATGCGCCTTTTTTCCTTTCACCCTGATTTATATACTTTTGTTAGCTTTCTTAAAGCTGCCGCAAAATCAAAGTCTCCAAAACTGGCAATGCAAATCCATTGTTATATTGTAAAATGCAGATTTGCAGCTGATCATTCTATCATCACTTCTCTTATAATATCTTATGGGAAATGCAATAGGATTGATGAAGCAAAAAGGGTATTTTATGAGACCGATAAGTTAAAGCTAGAACATCTCAAAGCACTGTCAACTGTTTTTGTCCATATTGGTCTTCAAGCGGATGCTCTGAATTTGTTTAATGTGTCAAGGGGATTAGACCTTGAAGTTGACGTGGCTTCTTTCAGTAATGCCATTAAAGCTTGTGGTGGTATGACAAGTCTTGAGCAAGGAAGAGGAATTCACTCTCTAGCTATCAGATCTGGTTTTGATCAAGGTATCTTTATTCAAAGTGCTCTTATTGATATGTATTGTAAAAGTGGAAGTTTAACAGAAGCAGAAAAAATTTTCAAAAGTACATCGGATAATTTGGCAGCTTGGAATGCCATGATCATGGGATATTCTTACCATGGTCGGTCTAATGAAGTCTTCTCAATTTTCAATAAGATGGTTGAAATTGGACTAAAACCAGATGAGATTACCTTTCTCGGAGTTTTGACATCTTGTCGCCATTCTGGGTTGGTAAAGGAAGCACGTTTTTATTTAAACTCCATGTTTGTACTACATGGAGTAATTCCTCAACTAGAACACTATGCCAGTGTGGTTGATTTGCTTGGTCAGGTTGGACTTTTAGAAGAAGCAAAAAGGATTATTGATGAAATGCCTATTCACTGTGATGCTCATATGTGGCAGATTCTTCTATCAGCCTGTAGCATACATAAAAATGTTGAGCTAGGAAGTCTAGCTGCAAGAAAACTTCTTGACCTGCAGCCCGGAAATGAAACTGCATATCTCCTTCTTTCTAACATTCATGCTTCGGCAGGTACATGGAAATCTGTCCAGGAATTGAGGAAAGAAATGAAGGAAAAAATTGTCCGCAAGGAACCGGGTTTTAGTTCGATTCAAGTTGGAAGAGTGGTAAATTTCTTTTTGGCTGGTGATACATCGCATCTCATGAATGACGAGATATACACAGAGCTAGAAAAGTTATATAGGCAGATTTGGTCCTATCCCAGATTAGAACTAAAGGATGCATTTGAAGTGGGTTTACAAGCTGTGTGA 1872 37.77 MVCAYVWNGEYEKSKKIFMEMTKLSLEINEFSCTGVLGGIFCGEEGKKIHSLTMKKGLLCGCSIHLNNAIINMYSRCGYKSDAAKVFDDMSEPDIVSWTGRIGAALDEGEALECFRYLRARDIELNEYTIVNLLSVITSSGMLLSGNQIQAHCHKDGHLLCISVSNHLISMYSKHGQMDEAKLVFNDMVSIDSVSCNSLIDGYSENGLLKETFAAFSHMRLFSFHPDLYTFVSFLKAAAKSKSPKLAMQIHCYIVKCRFAADHSIITSLIISYGKCNRIDEAKRVFYETDKLKLEHLKALSTVFVHIGLQADALNLFNVSRGLDLEVDVASFSNAIKACGGMTSLEQGRGIHSLAIRSGFDQGIFIQSALIDMYCKSGSLTEAEKIFKSTSDNLAAWNAMIMGYSYHGRSNEVFSIFNKMVEIGLKPDEITFLGVLTSCRHSGLVKEARFYLNSMFVLHGVIPQLEHYASVVDLLGQVGLLEEAKRIIDEMPIHCDAHMWQILLSACSIHKNVELGSLAARKLLDLQPGNETAYLLLSNIHASAGTWKSVQELRKEMKEKIVRKEPGFSSIQVGRVVNFFLAGDTSHLMNDEIYTELEKLYRQIWSYPRLELKDAFEVGLQAV 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5167068 5168939 - Bda024964.1 Bda08g00510 11366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00510 623 Pfam E motif 510 572 IPR046848 -
Bda08g00510 623 Pfam PPR repeat 468 491 IPR002885 -
Bda08g00510 623 Pfam PPR repeat 166 190 IPR002885 -
Bda08g00510 623 Pfam PPR repeat 368 388 IPR002885 -
Bda08g00510 623 Pfam PPR repeat 68 91 IPR002885 -
Bda08g00510 623 Pfam PPR repeat 1 24 IPR002885 -
Bda08g00510 623 Pfam PPR repeat 267 288 IPR002885 -
Bda08g00510 623 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Bda08g00510 623 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Bda08g00510 623 TIGRFAM PPR: pentatricopeptide repeat domain 166 190 IPR002885 -
Bda08g00510 623 PANTHER OS01G0913400 PROTEIN-RELATED 1 616 - -
Bda08g00510 623 Gene3D Tetratricopeptide repeat domain 1 153 IPR011990 GO:0005515
Bda08g00510 623 Gene3D Tetratricopeptide repeat domain 391 576 IPR011990 GO:0005515
Bda08g00510 623 PANTHER - 1 616 - -
Bda08g00510 623 Pfam PPR repeat family 192 239 IPR002885 -
Bda08g00510 623 Pfam PPR repeat family 393 439 IPR002885 -
Bda08g00510 623 Gene3D Tetratricopeptide repeat domain 240 348 IPR011990 GO:0005515
Bda08g00510 623 Gene3D Tetratricopeptide repeat domain 154 239 IPR011990 GO:0005515
Bda08g00510 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Bda08g00510 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00510 - - - qsu:112032565 723.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00510 Bda-Chr8:5167068 Bda08g00065 Bda-Chr8:527492 5.80E-35 dispersed
Bda08g00510 Bda-Chr8:5167068 Bda07g00675 Bda-Chr7:8038499 8.66E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g27 Blo02g01116 . . Bda08g00510 Bpe05g00653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0800 . . . . . . . . . . . Bma05g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016667 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00510 Bda_Chr08 FPKM 4.629108 2.998482 14.998787 13.663732 62.147312 51.067036 69.604271 16.360973 17.998348