Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda08g00511 | ATGGGTTTTCCGGTGTGCCATTCTGAACTTCTCTTTCCAAATCTCTTCATCCAGTCACTCTTCATCCTAGTTATTATCAGAAAGCTCGTCAGCGCCATTTTTCGCTCTCTGGGTCTCTCCGATTTTCTCGAACCTGATATTTCTCCGCCACAACAGAGCTACTACCACCATCTCCTCGACGACCCCACCCATTCCTTCCAGTTCGACTCCGCTTCGGCTGCACTGATCCAGAAGATTTTACCCGTTGTAAAGTTCTCGGACTTCGTCGACCCGCCGGAGAACTGCTCCGTTTGCCTCCATGATTTCAAGGCTGACGACGATATCCGACAGCTCGCGAATTGTCGCCACGTGTTTCACCGGAGCTGCGTCGACCGCTGGATGGGTTACGATCAGAAAACTTGCCCTTTATGTCGAACGTCGTTTATTCCGGCGAATTCACGCAGTGGTTTTAACGAGAGGTTTTGGTCTGTTCCTGGTGACTATTCCTACATTACTTGCGCTTTCTAG | 507 | 50.1 | MGFPVCHSELLFPNLFIQSLFILVIIRKLVSAIFRSLGLSDFLEPDISPPQQSYYHHLLDDPTHSFQFDSASAALIQKILPVVKFSDFVDPPENCSVCLHDFKADDDIRQLANCRHVFHRSCVDRWMGYDQKTCPLCRTSFIPANSRSGFNERFWSVPGDYSYITCAF | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5180809 | 5181315 | + | Bda024966.1 | Bda08g00511 | 11367 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda08g00511 | 168 | SUPERFAMILY | RING/U-box | 75 | 144 | - | - | |
| Bda08g00511 | 168 | Pfam | Ring finger domain | 94 | 138 | IPR001841 | - | |
| Bda08g00511 | 168 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 143 | IPR013083 | - | |
| Bda08g00511 | 168 | SMART | ring_2 | 95 | 137 | IPR001841 | - | |
| Bda08g00511 | 168 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 158 | - | - | |
| Bda08g00511 | 168 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 138 | IPR001841 | - | |
| Bda08g00511 | 168 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 158 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00991 | Bda-Chr3:8976749 | Bda08g00511 | Bda-Chr8:5180809 | 1.08E-47 | dispersed | |
| Bda07g00159 | Bda-Chr7:1971248 | Bda08g00511 | Bda-Chr8:5180809 | 5.49E-17 | dispersed | |
| Bda08g00511 | Bda-Chr8:5180809 | Bda01g00419 | Bda-Chr1:30723031 | 1.99E-13 | dispersed | |
| Bda14g00663 | Bda-Chr14:4991286 | Bda08g00511 | Bda-Chr8:5180809 | 7.13E-15 | dispersed | |
| Bda08g00511 | Bda-Chr8:5180809 | Bda08g00140 | Bda-Chr8:1319207 | 4.22E-48 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda08g00511 | K16281 | - | jre:109014495 | 201.83 |