Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00511 ATGGGTTTTCCGGTGTGCCATTCTGAACTTCTCTTTCCAAATCTCTTCATCCAGTCACTCTTCATCCTAGTTATTATCAGAAAGCTCGTCAGCGCCATTTTTCGCTCTCTGGGTCTCTCCGATTTTCTCGAACCTGATATTTCTCCGCCACAACAGAGCTACTACCACCATCTCCTCGACGACCCCACCCATTCCTTCCAGTTCGACTCCGCTTCGGCTGCACTGATCCAGAAGATTTTACCCGTTGTAAAGTTCTCGGACTTCGTCGACCCGCCGGAGAACTGCTCCGTTTGCCTCCATGATTTCAAGGCTGACGACGATATCCGACAGCTCGCGAATTGTCGCCACGTGTTTCACCGGAGCTGCGTCGACCGCTGGATGGGTTACGATCAGAAAACTTGCCCTTTATGTCGAACGTCGTTTATTCCGGCGAATTCACGCAGTGGTTTTAACGAGAGGTTTTGGTCTGTTCCTGGTGACTATTCCTACATTACTTGCGCTTTCTAG 507 50.1 MGFPVCHSELLFPNLFIQSLFILVIIRKLVSAIFRSLGLSDFLEPDISPPQQSYYHHLLDDPTHSFQFDSASAALIQKILPVVKFSDFVDPPENCSVCLHDFKADDDIRQLANCRHVFHRSCVDRWMGYDQKTCPLCRTSFIPANSRSGFNERFWSVPGDYSYITCAF 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5180809 5181315 + Bda024966.1 Bda08g00511 11367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00511 168 SUPERFAMILY RING/U-box 75 144 - -
Bda08g00511 168 Pfam Ring finger domain 94 138 IPR001841 -
Bda08g00511 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Bda08g00511 168 SMART ring_2 95 137 IPR001841 -
Bda08g00511 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 158 - -
Bda08g00511 168 ProSiteProfiles Zinc finger RING-type profile. 95 138 IPR001841 -
Bda08g00511 168 PANTHER BRH1 RING FINGER PROTEIN 1 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00511 K16281 RHA1; RING-H2 zinc finger protein RHA1 - jre:109014495 201.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00991 Bda-Chr3:8976749 Bda08g00511 Bda-Chr8:5180809 1.08E-47 dispersed
Bda07g00159 Bda-Chr7:1971248 Bda08g00511 Bda-Chr8:5180809 5.49E-17 dispersed
Bda08g00511 Bda-Chr8:5180809 Bda01g00419 Bda-Chr1:30723031 1.99E-13 dispersed
Bda14g00663 Bda-Chr14:4991286 Bda08g00511 Bda-Chr8:5180809 7.13E-15 dispersed
Bda08g00511 Bda-Chr8:5180809 Bda08g00140 Bda-Chr8:1319207 4.22E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00149 . 73 559 C3H Transcription Factor Family AT2G31510 74.6 3.0e-226 781.2
Bda13g01841 . 78 627 C3H Transcription Factor Family AT2G31510 64.8 4.7e-211 730.7
Bda08g00149 . 56 517 C3H Transcription Factor Family AT2G31770 58.8 1.2e-167 586.6
Bda08g00149 . 56 517 C3H Transcription Factor Family AT2G31760 58.5 6.3e-166 580.9
Bda13g00470 . 1 196 C3H Transcription Factor Family AT3G03550 53.0 3.8e-53 205.7
Bda01g01195 . 1 217 C3H Transcription Factor Family AT3G02290 55.9 6.7e-67 250.8
Bda12g00210 . 1 220 C3H Transcription Factor Family AT3G02290 55.3 5.7e-66 247.7
Bda07g01037 . 1 225 C3H Transcription Factor Family AT3G02290 50.9 4.2e-61 231.5
Bda02g00457 . 1 304 C3H Transcription Factor Family AT1G11020 77.2 3.8e-137 484.6
Bda05g00634 . 39 213 C3H Transcription Factor Family AT1G50440 63.4 9.7e-58 220.3
Bda10g00414 . 1 350 C3H Transcription Factor Family AT5G08750 61.9 2.8e-120 428.7
Bda07g01771 BCT 1 351 C3H Transcription Factor Family AT3G16090 75.6 3.0e-141 498.8
Bda05g00264 BCT 1 220 C3H Transcription Factor Family AT3G16090 56.9 1.3e-72 270.8
Bda01g01195 . 1 217 C3H Transcription Factor Family AT5G38895 55.7 1.8e-65 246.5
Bda12g00210 . 1 220 C3H Transcription Factor Family AT5G38895 50.7 3.3e-59 225.7
Bda01g00547 . 29 221 C3H Transcription Factor Family AT1G19310 67.5 6.5e-75 277.3
Bda10g00312 . 23 232 C3H Transcription Factor Family AT1G19310 62.6 2.1e-73 272.3
Bda10g00322 CCT 16 225 C3H Transcription Factor Family AT1G19310 62.1 8.0e-73 270.4
Bda03g00250 . 16 167 C3H Transcription Factor Family AT1G19310 60.0 2.4e-53 205.7
Bda14g01207 CCT 16 141 C3H Transcription Factor Family AT1G19310 64.7 4.9e-46 181.4
Bda07g01466 . 1 179 C3H Transcription Factor Family AT1G26800 51.6 1.5e-49 193.0
Bda10g01064 . 13 190 C3H Transcription Factor Family AT1G26800 52.7 1.9e-49 192.6
Bda04g00071 . 1 322 C3H Transcription Factor Family AT2G22120 83.6 1.1e-161 566.2
Bda09g01624 . 1 176 C3H Transcription Factor Family AT5G07040 56.8 7.9e-43 170.2
Bda06g00490 BCT 1 389 C3H Transcription Factor Family AT1G18470 74.8 1.4e-174 609.4
Bda15g00656 BCT 17 338 C3H Transcription Factor Family AT1G18470 72.0 1.0e-137 486.9
Bda01g02099 . 1 352 C3H Transcription Factor Family AT1G18470 61.6 1.7e-124 443.0
Bda11g01579 . 4 254 C3H Transcription Factor Family AT1G18470 72.5 7.8e-106 380.9
Bda08g00149 . 56 517 C3H Transcription Factor Family AT2G31770 58.8 1.2e-167 586.6
Bda08g00149 . 56 517 C3H Transcription Factor Family AT2G31760 58.5 6.3e-166 580.9
Bda12g00980 CCT 15 263 C3H Transcription Factor Family AT5G55970 69.1 7.7e-98 354.0
Bda07g00422 CCT 15 262 C3H Transcription Factor Family AT5G55970 67.3 2.5e-96 349.0
Bda10g00414 . 1 350 C3H Transcription Factor Family AT5G63780 57.4 7.0e-111 397.5
Bda07g00422 CCT 17 310 C3H Transcription Factor Family AT4G26580 67.8 1.6e-117 419.5
Bda12g00980 CCT 33 322 C3H Transcription Factor Family AT4G26580 68.2 5.1e-116 414.5
Bda01g00074 . 15 502 C3H Transcription Factor Family AT5G01960 64.8 5.4e-163 570.9
Bda14g01099 . 1 258 C3H Transcription Factor Family AT5G01960 52.5 1.0e-52 204.5
Bda06g00433 BCT,CCT 1 150 C3H Transcription Factor Family AT2G04240 54.4 3.4e-41 164.9
Bda02g00620 . 3 138 C3H Transcription Factor Family AT5G19430 58.4 1.1e-41 167.2
Bda02g00620 . 1 128 C3H Transcription Factor Family AT5G12310 63.3 1.3e-42 170.2
Bda05g00947 BCT 63 220 C3H Transcription Factor Family AT5G05830 64.2 1.0e-55 213.4
Bda14g00275 . 22 208 C3H Transcription Factor Family AT5G05830 58.5 1.8e-52 202.6
Bda03g01381 BCT 60 219 C3H Transcription Factor Family AT5G05830 59.3 3.1e-52 201.8
Bda05g00277 . 60 219 C3H Transcription Factor Family AT5G05830 59.3 2.0e-51 199.1
Bda15g00243 . 80 213 C3H Transcription Factor Family AT5G05830 63.5 7.5e-46 180.6
Bda09g01136 . 23 410 C3H Transcription Factor Family AT4G28890 52.1 7.0e-94 341.3
Bda12g00210 . 1 220 C3H Transcription Factor Family AT5G15790 58.4 7.2e-69 257.3
Bda01g01195 . 1 217 C3H Transcription Factor Family AT5G15790 57.8 1.0e-67 253.4
Bda07g01037 . 1 225 C3H Transcription Factor Family AT5G15790 53.2 4.5e-63 238.0
Bda14g00139 . 1 274 C3H Transcription Factor Family AT3G55530 76.2 2.6e-110 395.2
Bda10g00600 . 1 222 C3H Transcription Factor Family AT1G63900 78.9 2.7e-99 358.6
Bda13g00448 . 12 397 C3H Transcription Factor Family AT2G44580 56.5 1.1e-122 436.8
Bda01g00547 . 30 152 C3H Transcription Factor Family AT1G74990 62.4 5.4e-40 160.6
Bda10g00312 . 30 157 C3H Transcription Factor Family AT1G74990 56.8 2.1e-39 158.7
Bda10g00322 CCT 23 150 C3H Transcription Factor Family AT1G74990 56.8 2.1e-39 158.7
Bda03g00250 . 29 147 C3H Transcription Factor Family AT1G74990 59.7 7.3e-37 150.2
Bda01g01356 . 3 336 C3H Transcription Factor Family AT5G20910 58.2 9.2e-104 373.6
Bda07g01771 BCT 119 429 C3H Transcription Factor Family AT1G65040 54.8 2.1e-79 292.7
Bda05g00264 BCT 72 236 C3H Transcription Factor Family AT1G65040 61.9 3.4e-45 179.1
Bda10g00312 . 25 233 C3H Transcription Factor Family AT2G23780 62.4 4.2e-74 274.6
Bda10g00322 CCT 18 226 C3H Transcription Factor Family AT2G23780 61.9 1.6e-73 272.7
Bda01g00547 . 31 231 C3H Transcription Factor Family AT2G23780 55.3 3.5e-60 228.4
Bda14g01207 CCT 19 139 C3H Transcription Factor Family AT2G23780 76.6 2.4e-53 205.7
Bda03g00250 . 11 159 C3H Transcription Factor Family AT2G23780 56.8 4.0e-48 188.3
Bda05g01005 BCT 1 315 C3H Transcription Factor Family AT3G10810 55.4 2.4e-82 303.1
Bda08g00140 . 1 157 C3H Transcription Factor Family AT1G63840 52.2 9.7e-44 173.3
Bda03g00991 . 1 157 C3H Transcription Factor Family AT1G63840 53.4 2.2e-43 172.2
Bda08g00511 . 1 156 C3H Transcription Factor Family AT1G63840 51.9 4.2e-39 157.9
Bda07g01752 . 17 346 C3H Transcription Factor Family AT1G68070 68.9 1.3e-127 453.0
Bda10g01198 . 4 357 C3H Transcription Factor Family AT1G68070 65.2 1.1e-126 449.9
Bda08g00529 . 40 366 C3H Transcription Factor Family AT1G68070 51.1 2.5e-86 315.8
Bda13g00332 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 3.1e-84 308.9
Bda03g00332 . 5 183 C3H Transcription Factor Family AT1G76410 53.6 1.3e-49 193.0
Bda11g00985 . 11 183 C3H Transcription Factor Family AT1G76410 54.9 3.3e-48 188.3
Bda13g01283 . 1 397 C3H Transcription Factor Family AT1G80400 54.4 2.6e-114 409.1
Bda01g00979 . 1 397 C3H Transcription Factor Family AT1G80400 53.8 1.7e-113 406.4
Bda10g00800 . 67 302 C3H Transcription Factor Family AT1G80400 60.5 7.3e-77 284.6
Bda12g00528 . 35 207 C3H Transcription Factor Family AT2G18650 55.2 2.5e-43 173.3
Bda08g00149 . 73 559 C3H Transcription Factor Family AT2G31510 74.6 3.0e-226 781.2
Bda13g01841 . 78 627 C3H Transcription Factor Family AT2G31510 64.8 4.7e-211 730.7
Bda01g00419 . 5 167 C3H Transcription Factor Family AT2G35910 58.8 2.0e-49 192.6
Bda03g01584 BCT 1 304 C3H Transcription Factor Family AT2G41980 78.0 1.5e-143 505.8
Bda05g01095 . 12 334 C3H Transcription Factor Family AT2G41980 71.9 4.7e-137 484.2
Bda05g00126 CCT,ECH 63 320 C3H Transcription Factor Family AT2G41980 81.0 2.8e-129 458.4
Bda11g00212 . 29 302 C3H Transcription Factor Family AT2G41980 75.5 2.2e-126 448.7
Bda14g00436 CCT 41 307 C3H Transcription Factor Family AT2G41980 76.0 1.2e-124 443.0
Bda15g00095 CCT 48 305 C3H Transcription Factor Family AT2G41980 77.9 2.1e-124 442.2
Bda06g00784 CCT,ECH 45 216 C3H Transcription Factor Family AT2G41980 74.6 7.4e-74 274.2
Bda01g00018 . 2 112 C3H Transcription Factor Family AT3G06140 67.0 8.3e-40 161.4
Bda05g01232 . 33 324 C3H Transcription Factor Family AT3G09770 60.1 6.8e-84 307.8
Bda05g01235 . 33 324 C3H Transcription Factor Family AT3G09770 60.1 6.8e-84 307.8
Bda03g01724 . 53 268 C3H Transcription Factor Family AT3G09770 56.6 4.1e-65 245.4
Bda01g01830 . 1 167 C3H Transcription Factor Family AT1G15100 51.5 6.8e-39 157.1
Bda07g01364 . 68 618 C3H Transcription Factor Family AT3G26730 56.2 2.3e-166 582.8
Bda15g00493 . 111 219 C3H Transcription Factor Family AT1G72220 67.3 1.4e-38 157.5
Bda03g00332 . 5 190 C3H Transcription Factor Family AT1G20823 55.4 6.1e-53 204.1
Bda11g00985 . 28 190 C3H Transcription Factor Family AT1G20823 59.6 1.2e-51 199.9
Bda14g00977 . 15 235 C3H Transcription Factor Family AT5G66070 71.5 6.8e-77 283.9
Bda04g00171 . 23 229 C3H Transcription Factor Family AT5G66070 76.9 9.2e-74 273.5
Bda11g01819 . 82 251 C3H Transcription Factor Family AT5G66070 74.7 4.0e-69 258.1
Bda06g00490 BCT 5 467 C3H Transcription Factor Family AT1G73950 70.8 1.9e-192 668.7
Bda15g00656 BCT 17 416 C3H Transcription Factor Family AT1G73950 68.0 1.4e-158 556.2
Bda01g02099 . 1 430 C3H Transcription Factor Family AT1G73950 58.3 1.4e-145 513.1
Bda11g01579 . 3 254 C3H Transcription Factor Family AT1G73950 61.6 1.3e-82 303.9
Bda10g01198 . 7 251 C3H Transcription Factor Family AT2G01735 63.4 1.2e-82 303.1
Bda07g01752 . 8 240 C3H Transcription Factor Family AT2G01735 63.3 2.3e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008626 1 1 1 3 3 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00511 Bda_Chr08 FPKM 12.049363 12.675877 9.178542 8.98694 11.761782 11.790325 12.513851 8.552379 7.724043