Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00514 ATGTCTTCCCCGAGCAAACGGCGAGAACTGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAACGATAGCATGCAAGAGTTCTATGTCGATTTCCATGGACCTAAAGACAGCCCATATCAAGGGGGTGTGTGGAGGATAAGAGTGGAGTTGCCCGATGCTTATCCTTATAAATCACCATCTATTGGCTTTGTCAACAAAATTTATCATCCAAATGTTGATGAAATGTCCGGCTCTGTTTGTTTAGACGTTATCAACCAGACGTGGAGCCCCATGTTCGACCTTGTAAATGTGTTTGAAGTGTTCCTTCCCCAGCTTCTATTGTATCCCAACCCATCAGACCCGTTGAATGGAGAAGCTGCGGCCCTAATGATGCGCGATCGTTCGACTTACGAACAACGAGTGAAAGAGTACTGTGAGAAATATGCAAAGCCAGAAGACAATGGAGCTCGGGAGGAAGAAAAATCGAGCGATGGGGACCTGAGCGAAGATGATTACGGGTCGAGTGACGAGGCAGTGGCAGGTCCAGCTGATCCTTAA 552 46.56 MSSPSKRRELDLMKLMMSDYKVEMINDSMQEFYVDFHGPKDSPYQGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRSTYEQRVKEYCEKYAKPEDNGAREEEKSSDGDLSEDDYGSSDEAVAGPADP 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5194621 5196347 + Bda024969.1 Bda08g00514 11370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00514 183 MobiDBLite consensus disorder prediction 141 161 - -
Bda08g00514 183 SUPERFAMILY UBC-like 5 148 IPR016135 -
Bda08g00514 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Bda08g00514 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Bda08g00514 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Bda08g00514 183 CDD UBCc 7 143 IPR000608 -
Bda08g00514 183 Pfam Ubiquitin-conjugating enzyme 9 142 IPR000608 -
Bda08g00514 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Bda08g00514 183 SMART ubc_7 4 148 - -
Bda08g00514 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Bda08g00514 183 MobiDBLite consensus disorder prediction 141 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00514 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - jre:108997476 352.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00114 Bda08g00514 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00514 Bda-Chr8:5194621 Bda07g01918 Bda-Chr7:36640752 1.51E-28 dispersed
Bda06g00584 Bda-Chr6:8075696 Bda08g00514 Bda-Chr8:5194621 4.93E-99 transposed
Bda06g00114 Bda-Chr6:1838932 Bda08g00514 Bda-Chr8:5194621 1.51E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
Vvi15g843 . . . Bda08g00514 . . . . . . Cma06g01074 . . . . . . Bhi01g00344 Tan10g0221 . . . . . Cla05g00159 Cam05g0174 Cec05g0172 Cco05g0183 Clacu05g0171 Cmu05g0163 Cre05g0227 . . . . Lsi05g02049 . . Cme06g00170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00883 Chy06g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00514 Bda_Chr08 FPKM 10.575758 13.066483 25.242163 28.907934 10.714136 9.323599 11.631299 31.104595 28.607786